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Table 1 Genes in the Sylvio X10, CL Brener and Esmeraldo maxicircle consensus sequences

From: The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer

    position (5'-3')    length  
Gene Editing Sylvio CL Brener Esmeraldo Sylvio CL Brener Esmeraldo
      CLADE A CLADE B CLADE C
12S rRNA - 1-1159 1-1161 1-1160 1159 1161 1160
9S rRNA - 1203-1812 1200-1808 1197-1804 610 608 607
ND8 extensive 1856-2135 1853-2131 1957-2127 280 279 271
ND9 extensive 2198-2547 2195-2532 2192-2545 350 338 354
MURF5 none 2541-2801 2526-2789 2522-2788 261 264 267
ND7 extensive 2877-3623 2857-3611 2862-3617 747 755 756
COIII extensive 3697-4116 3678-4100 2685-4109 420 424 425
Cyb 5' end 4189-5269 4175-5254 4167-5246 1081 1080 1080
ATPase 6 extensive 5310-5639 5292-5627 5288-5622 330 336 335
MURF1 none 5696-7036 5675-7015 5681-7029 1341 1340 1347
CR3* extensive 7023-7144 7002-7120 7016-7136 ~122 ~119 ~121
NDI none 7138-8079 7116-8057 7132-8073 942 942 942
COII+gRNA internal 8093-8737 8071-8715 8088-8733 645 645 646
MURF2 5' end 8748-9800 8725-9780 8750-9794 1053 1056 1045
COI none 9791-11440 9771-11420 9785-11434 1650 1650 1650
CR4 extensive 11492-11700 11471-11677 11487-11658 209 207 172
MURF2 gRNA - 11764-11804 11744-11784 - 41 41 -
ND4 none 11802-13114 11782-13095 11659-12872 1313 1314 1214
ND3 extensive 13108-13300 13087-13279 12864-13051 193 193 188
RPS12 extensive 13377-13564 13357-13547 13129-13315 188 191 187
ND5 none 13586-15185** 13568-15337 13335-15105 1600+ 1770 1771
  1. Gene positions are given relative to the start of the 12S rRNA
  2. *CR3 5' and 3' end positions are uncertain
  3. **partial sequence
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