Table 1 Genes in the Sylvio X10, CL Brener and Esmeraldo maxicircle consensus sequences
From: The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer
| Â | Â | Â | position (5'-3') | Â | Â | length | Â |
|---|---|---|---|---|---|---|---|
Gene | Editing | Sylvio | CL Brener | Esmeraldo | Sylvio | CL Brener | Esmeraldo |
| Â | Â | Â | Â | Â | CLADE A | CLADE B | CLADE C |
12S rRNA | - | 1-1159 | 1-1161 | 1-1160 | 1159 | 1161 | 1160 |
9S rRNA | - | 1203-1812 | 1200-1808 | 1197-1804 | 610 | 608 | 607 |
ND8 | extensive | 1856-2135 | 1853-2131 | 1957-2127 | 280 | 279 | 271 |
ND9 | extensive | 2198-2547 | 2195-2532 | 2192-2545 | 350 | 338 | 354 |
MURF5 | none | 2541-2801 | 2526-2789 | 2522-2788 | 261 | 264 | 267 |
ND7 | extensive | 2877-3623 | 2857-3611 | 2862-3617 | 747 | 755 | 756 |
COIII | extensive | 3697-4116 | 3678-4100 | 2685-4109 | 420 | 424 | 425 |
Cyb | 5' end | 4189-5269 | 4175-5254 | 4167-5246 | 1081 | 1080 | 1080 |
ATPase 6 | extensive | 5310-5639 | 5292-5627 | 5288-5622 | 330 | 336 | 335 |
MURF1 | none | 5696-7036 | 5675-7015 | 5681-7029 | 1341 | 1340 | 1347 |
CR3* | extensive | 7023-7144 | 7002-7120 | 7016-7136 | ~122 | ~119 | ~121 |
NDI | none | 7138-8079 | 7116-8057 | 7132-8073 | 942 | 942 | 942 |
COII+gRNA | internal | 8093-8737 | 8071-8715 | 8088-8733 | 645 | 645 | 646 |
MURF2 | 5' end | 8748-9800 | 8725-9780 | 8750-9794 | 1053 | 1056 | 1045 |
COI | none | 9791-11440 | 9771-11420 | 9785-11434 | 1650 | 1650 | 1650 |
CR4 | extensive | 11492-11700 | 11471-11677 | 11487-11658 | 209 | 207 | 172 |
MURF2 gRNA | - | 11764-11804 | 11744-11784 | - | 41 | 41 | - |
ND4 | none | 11802-13114 | 11782-13095 | 11659-12872 | 1313 | 1314 | 1214 |
ND3 | extensive | 13108-13300 | 13087-13279 | 12864-13051 | 193 | 193 | 188 |
RPS12 | extensive | 13377-13564 | 13357-13547 | 13129-13315 | 188 | 191 | 187 |
ND5 | none | 13586-15185** | 13568-15337 | 13335-15105 | 1600+ | 1770 | 1771 |