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Table 2 P. hawaiensis transcriptome BLAST results

From: De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

  # Sequences # BLAST hits against nr1(%) # Unique BLAST hits against nr1(%)
Isogroups 25,735 n/a2 n/a2
Isotigs 35,301 10,424 (29.5%) 10,203 (28.9%)
Contigs 89,664 9,715 (10.8%) n/a3
Singletons 276,564 9,583 (3.5%) 8,864 (3.2%)
Total Non-Redundant Assembly Sequences (= isotigs + singletons) 311,865 20,007 (6.4%) 19,067 (6.1%)
  1. 1. nr = NCBI non-redundant database
  2. 2. Because isogroups are collections of isotigs that are hypothesized to originate from the same gene, they do not comprise a single sequence and so cannot be compared by BLAST to nr.
  3. 3. The custom script UniqueBlast.pl was applied only to non-redundant assembly sequences (i.e. isotigs and singletons).