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Table 1 Summary of sequence reads obtained from different RNA-Seq libraries

From: Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

Library Total reads Mapped reads Unmapped reads % mapped reads
R_BD1 13,456,136 4,557,242 8,898,894 33,86%
ET_ BD 1 14,505,855 5,801,368 8,704,487 39,99%
LT_ BD 1 14,599,502 7,567,175 7,032,327 51,83%
Sc_ BD 1 9,861,818 1,487,604 8,374,214 15,08%
GII_ BD 1 9,294,474 3,647,906 5,646,568 39.25%
GV_ BD 1 10,641,921 6,610,820 4,031,101 62.12%
Oo_ BD 2 55,140,294 714,769 54,425,525 1.3%
LT_SS3+ 13,928,058 8,852,802 5,075,256 63.56%
Sc_ SS 3+ 14,360,448 8,386,042 5,974,406 58.40%
GII_ SS3+ 9,331,268 4,952,677 4,378,591 53.08%
GV_ SS3+ 20,197,230 6,534,612 13,662,618 32.35%
  1. R, ET, LT, Sc, GII, GV, and Oo correspond to ring, early trophozoite, late trophozoite, schizont, gametocyte II, gametocyte V, and ookinete stages, respectively. BD represents bidirectional libraries, and SS represents strand-specific libraries. "Total reads" corresponds to the initial output of sequencing after analysis with Illumina pipeline v3.1; "mapped reads" refers to numbers of reads mapped to the Pf3D7 reference genome (PlasmoDB version 7.1) allowing one single hit and no mismatches (1), one mismatch (2), or up to two mismatches (3) at the reads. + indicates the total numbers of reads obtained after de-multiplexing.