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Table 1 Statistics of the potato AFLP and WGP physical maps

From: A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome

    Contigs per FPC standard size class BACs          
    INF 399 199 99 49 24 9 = 2 per contig BACs in physical map   Contig length (kb) Total contig length
Physical map Contig count Contigs 400 200 100 50 25 10 3 BACs Avg. N50 Total g.e. Single Contig AFLP markers Avg. N50 Mb g.e.
AFLP All 4150 0 6 23 160 449 1211 1744 557 14.4 25 64478 9.6 4731 59747 1770 306 372 1361 1.60
  > 5 Qs clones * 15 0 2 5 6 2 0 0 0            
  Anchored 1252 0 1 5 90 257 493 373 33 20.4 30       441 542 552 0.65
  WGP-enhanced map, all ** 2819 2 14 67 220 396 690 980 450 21.2 46       482 803 1361 1.60
  WGP-enhanced map, anchored ** 990 2 8 48 166 249 312 177 28 36.7 59       798 1150 790 0.93
WGP All 3601 0 4 28 121 468 1057 1422 501 14.8 26 65919 9.0 12781 53138 1721 387 559 1396 1.64
  > 5 Qs clones * 76 0 0 7 24 42 3 0 0            
  Anchored 1127 0 1 10 61 287 443 286 39 21.3 30       563 712 634 0.75
  AFLP-enhanced map, all *** 2785 1 12 51 184 391 714 978 454 19.1 40       501 851 1396 1.64
  AFLP-enhanced map, anchored *** 940 1 7 34 132 259 299 178 30 32.7 50       851 1175 800 0.94
  1. * Contigs with more than 5 "questionable" clones (i.e. clones with more than 50% of the bands not aligning within the contig)
  2. ** Contig count after incorporation of connections provided by overlapping contigs of the WGP physical map
  3. *** Contig count after incorporation of connections provided by overlapping contigs of the AFLP physical map