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Table 1 Statistics of the potato AFLP and WGP physical maps

From: A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome

   

Contigs per FPC standard size class

BACs

         
   

INF

399

199

99

49

24

9

= 2

per contig

BACs in physical map

 

Contig length (kb)

Total contig length

Physical map

Contig count

Contigs

400

200

100

50

25

10

3

BACs

Avg.

N50

Total

g.e.

Single

Contig

AFLP markers

Avg.

N50

Mb

g.e.

AFLP

All

4150

0

6

23

160

449

1211

1744

557

14.4

25

64478

9.6

4731

59747

1770

306

372

1361

1.60

 

> 5 Qs clones *

15

0

2

5

6

2

0

0

0

           
 

Anchored

1252

0

1

5

90

257

493

373

33

20.4

30

     

441

542

552

0.65

 

WGP-enhanced map, all **

2819

2

14

67

220

396

690

980

450

21.2

46

     

482

803

1361

1.60

 

WGP-enhanced map, anchored **

990

2

8

48

166

249

312

177

28

36.7

59

     

798

1150

790

0.93

WGP

All

3601

0

4

28

121

468

1057

1422

501

14.8

26

65919

9.0

12781

53138

1721

387

559

1396

1.64

 

> 5 Qs clones *

76

0

0

7

24

42

3

0

0

           
 

Anchored

1127

0

1

10

61

287

443

286

39

21.3

30

     

563

712

634

0.75

 

AFLP-enhanced map, all ***

2785

1

12

51

184

391

714

978

454

19.1

40

     

501

851

1396

1.64

 

AFLP-enhanced map, anchored ***

940

1

7

34

132

259

299

178

30

32.7

50

     

851

1175

800

0.94

  1. * Contigs with more than 5 "questionable" clones (i.e. clones with more than 50% of the bands not aligning within the contig)
  2. ** Contig count after incorporation of connections provided by overlapping contigs of the WGP physical map
  3. *** Contig count after incorporation of connections provided by overlapping contigs of the AFLP physical map