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Table 1 Tabulated GPCR sequence count at various stages of processing

From: The repertoire of G protein-coupled receptors in the human parasite Schistosoma mansoni and the model organism Schmidtea mediterranea

 

S. mansoni

S.mediterranea

Family

HMM

MC

H

Final

HMM

R

MC

H

R

Final

G

2

2

3

2

6

6

6

10

9

9

R

77

74

105

105

270

256

-

291

418

418

AS

4

4

5

5

11

11

11

30

24

22

F

5

4

5

5

10

8

8

11

10

11

  1. Sequence counts are provided for each GPCR family at different stages in the receptor mining protocol. The S. mansoni count is shown after application of the TM-focused HMM and filtering of the predicted proteome (HMM), extensive manual curation (MC), homology-based searches against the nucleotide assembly (H) and a final round of manual curation (Final). This progression is similarly displayed for S. mediterranea, with additional stages for the shedding of redundant sequences using BLAT (R).