|
S. mansoni
|
S.mediterranea
|
---|
Family | HMM | MC | H | Final | HMM | R | MC | H | R | Final |
---|
G
| 2 | 2 | 3 |
2
| 6 | 6 | 6 | 10 | 9 |
9
|
R
| 77 | 74 | 105 |
105
| 270 | 256 | - | 291 | 418 |
418
|
AS
| 4 | 4 | 5 |
5
| 11 | 11 | 11 | 30 | 24 |
22
|
F
| 5 | 4 | 5 |
5
| 10 | 8 | 8 | 11 | 10 |
11
|
- Sequence counts are provided for each GPCR family at different stages in the receptor mining protocol. The S. mansoni count is shown after application of the TM-focused HMM and filtering of the predicted proteome (HMM), extensive manual curation (MC), homology-based searches against the nucleotide assembly (H) and a final round of manual curation (Final). This progression is similarly displayed for S. mediterranea, with additional stages for the shedding of redundant sequences using BLAT (R).