Table 1 Summary of Euphorbia fischeriana transcriptome assembly
Assembly statistics | Â |
|---|---|
Total number of mate-pair reads (before trimming) | 17,502,188 |
Total number of read base pairs (bp) | 1,312,664,100 |
Average read length (before trimming; bp) | 75 |
Total number of read mate-pairs (after trimming) | 17,073,322 |
Total number of read singletons (after trimming) | 209,321 |
Average read length (after trimming; bp) | 68 |
Total number of ESTs | 1,884 |
Total number of EST base pairs (bp) | 1,275,624 |
Average EST length | 677 bp |
Total number of transcripts assembled (pre-isoform filtering) | 31,454 |
Total number of transcripts assembled (post-isoform filtering) | 18,180 |
Average length of all transcripts (bp) | 1,122 |
Transcripts with E-value > = 1e-05 against nr | 15,191 (83.6%) |
Average length of transcripts (bp) | 1,066 |