Table 2 Differentially expressed miRNAs of zebrafish brain under cold-acclimated and normal conditions.
miRNA name | Genome coordinate | miRNA sequence | # WC | # NC | Foldâ–³ |
|---|---|---|---|---|---|
dre-mir-9-5-3p | 5:49144568:49144646:- | UAAAGCUAGAUAACCGAAAGU | 37364 | 2559 | 7.377 (↑) |
dre-mir-30d-5p | 16:23860143:23860227:+ | UGUAAACAUCCCCGACUGGAAGCU | 19903 | 3770 | 2.667 (↑) |
miR_49 | 4:52193679:52193757:+ | UUCACUGUGGCGGAAAUGACC | 146 | 31 | 2.380 (↑) |
miR_46 | 21:25385786:25385876:+ | AAGAGAAGAGUGAGCGAGUGA | 149 | 32 | 2.352 (↑) |
dre-mir-30e-2-5p | 13:28550257:28550337:+ | UGUAAACAUCCUUGACUGGAAGC | 2856 | 617 | 2.339 (↑) |
dre-mir-24-4-3p | 22:5036700:5036779:+ | UGGCUCAGUUCAGCAGGAACAG | 652 | 142 | 2.320 (↑) |
dre-mir-2191-3p | 20:51108008:51108091:+ | UCACACCUACAAUCCCUGGCA | 435 | 99 | 2.221 (↑) |
dre-mir-146a-5p | 13:11738901:11738980:+ | UGAGAACUGAAUUCCAUAGAUGG | 42728 | 10063 | 2.145 (↑) |
miR_48 | 24:36888097:36888173:+ | UGAGGAGUUUAGAGCAAGUAA | 129 | 31 | 2.102 (↑) |
miR_23 | 5:8733083:8733158:- | AGCUGGUGUCCUGCAGAGUUU | 345 | 85 | 2.051 (↑) |
dre-mir-455-5p | 5:66430757:66430834:- | UAUGUGCCCUUGGACUACAUC | 168 | 42 | 2.021 (↑) |
dre-mir-30b-3p | 16:23860432:23860510:+ | CUGGGCGGAGGGUGUUUGCU | 456 | 462 | 2.006 (↓) |
dre-mir-145-5p | 14:40451735:40451816:+ | GUCCAGUUUUCCCAGGAAUCCC | 104 | 106 | 2.017 (↓) |
dre-mir-129-1-3p | 4:18861279:18861364:- | AAGCCCUUACCCCAAAAAGUAU | 643 | 697 | 2.145 (↓) |
dre-mir-133a-2-3p | 23:5570884:5570961:- | UUGGUCCCCUUCAACCAGCU | 117 | 130 | 2.199 (↓) |
miR_13 | 5:6754333:6754409:+ | UGUGGUGAUUAGAACAGGCUGA | 159 | 181 | 2.253 (↓) |
miR_3 | Zv8_NA10078:51197:51280:- | AUGACUCAAACCCGAGGACUU | 1279 | 1618 | 2.504 (↓) |
dre-mir-92a-1-3p | 8:45338553:45338629:+ | UAUUGCACUUGUCCCGGCCU | 9007 | 11736 | 2.579 (↓) |
dre-mir-458-3p | 14:26650559:26650634:- | AUAGCUCUUUGAAUGGUACU | 17139 | 22528 | 2.601 (↓) |
dre-mir-129-2-3p | 7:50935695:50935777:- | AAGCCCUUACCCCAAAAAGCAU | 7747 | 10824 | 2.766 (↓) |
dre-mir-152-3p | 3:21062159:21062235:+ | UCAGUGCAUGACAGAACUUUG | 2271 | 3467 | 3.021 (↓) |
dre-mir-183-5p | 4:14884980:14885059:+ | UAUGGCACUGGUAGAAUUCACU | 182 | 303 | 3.294 (↓) |
miR_5 | Zv8_NA3780:11797:11893:+ | GCAUUGGUGGUUCAGUGGGA | 698 | 1247 | 3.536 (↓) |
dre-mir-182-5p | 4:14886067:14886150:+ | UUUGGCAAUGGUAGAACUCACA | 151 | 365 | 4.783 (↓) |
miR_8 | 2:35918353:35918422:+ | AGCGGAUCAACUGAUGCGAC | 98 | 394 | 7.956 (↓) |