Skip to main content

Table 2 Overlap of individual D. melanogaster piRNA clusters from Brennecke i. (2007) with one or more clusters from the present study

From: The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

Top piRNA clusters Brennecke et al. (2007)

 

piRNA clusters from present study

 

Cluster id 1

Chr.

start

stop

Cluster Unique piRNAs 2

Cluster id 1

Chr.

start

stop

Cluster Unique piRNAs 2

1

2R

2144349

2386719

1686

1

2R

2110440

2217150

2350

     

2

2R

2304581

2394124

1975

2

X

21392175

21431907

986

24

X

21390160

21406447

231

     

37

X

21424709

21429775

194

3

4

1258473

1348320

684

27

4

1250143

1289828

217

5

2L

20148259

20227581

482

22

2L

20136345

20153079

235

     

14

2L

20164387

20176739

333

     

12

2L

20198129

20230518

392

6

3L

23273964

23314199

228

9

3L

23251131

23313773

520

7

U

4015849

4029971

176

7

U

4022887

4029272

834

8

X

21505666

21684449

170

4

X

21496075

21510974

1046

     

8

X

21526569

21543427

520

     

33

X

21631078

21672693

206

     

69

X

21604048

21622362

123

9

X

21759393

21844063

155

53

X

21786358

21878191

150

10

U

5766708

5772171

133

1246

U

5760625

5774759

6

11

3R

27895169

27905030

107

N/A 3

3R

N/A

N/A

N/A

12

3LHet

1402377

1557939

102

148

3LHet

1438260

1446518

55

     

99

3LHet

1485097

1535498

84

     

163

3LHet

1557765

1579687

50

13

3LHet

2011004

2180268

86

75

3LHet

2068714

2118742

110

     

133

3LHet

2126549

2158540

62

     

3480

3LHet

2167493

2167493

1

14

U

7542733

7545114

84

236

U

7532042

7545038

33

15

3LHet

238123

332969

71

N/A

3LHet

N/A

N/A

N/A

  1. 1Clusters were ordered and numbered according to the abundance of cluster unique piRNAs in both studies. Cluster 6 from Brennecke et al. (2007) was not reported here because it was not located on an assembled portion of the published D. melanogaster BGDP 5 genome.
  2. 2"Cluster unique piRNAs" were defined as piRNA sequences that mapped in only one location in the genome and inside a cluster.
  3. 3"N/A" indicates the absence of any overlapping piRNA cluster in present study.