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Table 2 Homeologous chromosome regions in the Atlantic salmon genome identified by mapping of MSV-5s, sequence alignments within salmon SNP-sequences (Salmon BLAST) and alignments against the stickleback genome sequence (Stickleback BLAST)

From: A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

  Mapping approach  
Homeologs MSV-5s Salmon BLAST Stickleback BLAST Danzmann et al (2008)
1p-9qa   4 37  
1qa-18qa   3 29  
1qb-11qb/13qb   6 52  
2p-5q 39 48 67 9
2q-12qa 1 5 33 5 (12qb)
3p-14qa    41  
3q-6p 7 14 67 9
4p-8q 14 16 21 4
4q-11qb/13qb   11 58  
5p-9qb   7 61  
6q-15qa   3 41  
7p-18qb    18  
7q-17qb 33 34 35 5 (17qa)
9qc-20qa   4 36  
10-16qa/23   3 112  
11qa-26 2 10 54 1
12qb-22   7 56  
13qa-15qb 1 7 40  
14qb-27   11 57  
16qb-17qa   7 19 5 (16qa-17qb)
18qa-28    14  
19qa-28   4 24  
19qb-29 1 3 38  
20qb-24   5 52  
21-25   5 51  
  1. MSV-5s are nested in the Salmon BLAST and Stickleback BLAST numbers are the total counts of SNP-bearing sequences aligning with the Stickleback genome and supporting the homeolog pairing.