Table 2 Enriched functional categories of genes correlating with specific extracellular protein production rate
From: Correlation of gene expression and protein production rate - a system wide study
ID | Description | Expression | % of ex-pressed | % of annotated | p-value | Intepretation |
|---|---|---|---|---|---|---|
IPR000639 | Epoxide hydrolase-like | C07wN | 2.2 | 26.7 | 0.000 | Various |
IPR006163 | Phosphopantetheine-binding | C07wN | 2.7 | 18.5 | 0.000 | 2ndary metabolism? |
IPR000873 | AMP-dependent synthetase/ligase | C07wN | 2.7 | 12.8 | 0.001 | 2ndary metabolism? |
IPR001579 | Glycoside hydrolase, chitinase active site | C07wN | 1.6 | 27.3 | 0.001 | Secreted |
IPR002938 | Monooxygenase, FAD-binding | C07wN | 1.6 | 23.1 | 0.002 | 2ndary metabolism? |
IPR000209 | Peptidase S8/S53, subtilisin/kexin/sedolisin | C07wN | 2.2 | 14.8 | 0.003 | Protein degradation |
IPR001223 | Glycoside hydrolase, family 18, catalytic domain | C07wN | 1.6 | 18.8 | 0.005 | Secreted |
IPR000073 | Alpha/beta hydrolase fold-1 | C07wN | 2.2 | 10.3 | 0.010 | 2ndary metabolism? |
IPR011701 | Major facilitator superfamily MFS-1 | C07wN | 4.4 | 5.3 | 0.017 | Transporter |
IPR003663 | Sugar/inositol transporter | C07wN | 2.2 | 8.3 | 0.020 | Transporter |
IPR000217 | Tubulin | -C07wN | 1.6 | 60.0 | 0.000 | Cytoskeleton |
IPR001353 | Proteasome, subunit alpha/beta | -C07wN | 2.2 | 28.6 | 0.000 | Protein degradation |
IPR000504 | RNA recognition motif, RNP-1 | -C07wN | 2.7 | 8.8 | 0.008 | Protein synthesis |
IPR000719 | Protein kinase, catalytic domain | -C07wN | 3.8 | 5.8 | 0.016 | Regulation |
12.04 | translation | -C07wN | 3.6 | 14.0 | 0.017 | Protein synthesis |
12.04.01 | translation initiation | -C07wN | 2.3 | 18.5 | 0.018 | Protein synthesis |
IPR000623 | Shikimate kinase | C08 | 0.7 | 60.0 | 0.001 | Various |
IPR011701 | Major facilitator superfamily MFS-1 | C08 | 3.9 | 10.5 | 0.003 | Transporter |
IPR003819 | Taurine catabolism dioxygenase TauD/TfdA | C08 | 0.7 | 42.9 | 0.003 | Sulphur metabolism |
IPR006094 | FAD linked oxidase, N-terminal | C08 | 1.2 | 19.2 | 0.007 | 2ndary metabolism? |
IPR003663 | Sugar/inositol transporter | C08 | 1.7 | 14.6 | 0.008 | Transporter |
IPR006163 | Phosphopantetheine-binding | C08 | 1.2 | 18.5 | 0.009 | 2ndary metabolism? |
IPR002403 | Cytochrome P450, E-class, group IV | C08 | 1.0 | 22.2 | 0.010 | 2ndary metabolism? |
IPR004841 | Amino acid permease domain | C08 | 1.2 | 15.6 | 0.018 | Transporter |
IPR000254 | Cellulose-binding domain, fungal | C08 | 0.7 | 23.1 | 0.023 | Secreted |
IPR002018 | Carboxylesterase, type B | C08 | 0.7 | 21.4 | 0.028 | Secreted |
IPR002085 | Alcohol dehydrogenase superfamily, zinc-containing | C08 | 1.5 | 11.8 | 0.036 | 2ndary metabolism? |
IPR001452 | Src homology-3 domain | -C08 | 1.6 | 28.0 | 0.000 | Cytoskeleton |
IPR001353 | Proteasome, subunit alpha/beta | -C08 | 1.1 | 35.7 | 0.001 | Protein degradation |
IPR002423 | Chaperonin Cpn60/TCP-1 | -C08 | 0.9 | 40.0 | 0.001 | Cytoskeleton |
IPR002108 | Actin-binding, cofilin/tropomyosin type | -C08 | 0.7 | 60.0 | 0.001 | Cytoskeleton |
IPR005937 | 26S proteasome subunit P45 | -C08 | 0.7 | 50.0 | 0.003 | Protein degradation |
IPR000717 | Proteasome component (PCI) domain | -C08 | 0.9 | 30.8 | 0.004 | Protein degradation |
IPR004827 | Basic-leucine zipper (bZIP) transcription factor | -C08 | 1.1 | 22.7 | 0.005 | Regulation |
IPR000594 | UBA/THIF-type NAD/FAD binding fold | -C08 | 0.7 | 37.5 | 0.007 | Protein degradation |
12.04 | translation | -C08 | 2.9 | 24.6 | 0.012 | Protein synthesis |
12.04.01 | translation initiation | -C08 | 1.6 | 29.6 | 0.017 | Protein synthesis |
IPR001199 | Cytochrome b5 | -C08 | 0.9 | 19.0 | 0.024 | Energy |
IPR003593 | ATPase, AAA+ type, core | -C08 | 2.2 | 9.8 | 0.046 | Various |