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Table 2 Total Peptide Spectra with Viral Assignment

From: Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Peptide Spectra:

Total

Viral

 

Annot.

Unannot.

BCBL-1

      

Latent

103113

KSHV

754 0.731%

=

751 (55)

3 (2)

Lytic

75435

KSHV

1135 1.505%

=

1131 (58)

4 (1)

BC-1

      

Latent

82992

KSHV

64 0.077%

=

57 (19)

7 (3)

  

EBV

29 0.035%

=

21 (12)

8 (4)

Lytic

85409

KSHV

537 0.629%

=

530 (41)

7 (2)

  

EBV

230 0.269%

=

217 (39)

13 (3)

  1. Total spectra for all observed peptides are reported in bold.
  2. The percentage of viral peptide spectra from the total number of observed spectra is indicated in italics.
  3. The total number of viral proteins detected is indicated in parentheses.
  4. Total possible KSHV proteins = 85 known; 3 novel
  5. Total possible EBV proteins = 83 known; 4 unannotated/novel
  6. Annot. = Annotated; Unannot. = Unannotated