| |
Direct.
|
Proposed Gene Name
|
Temporary Name
|
5'-ends¥/ORF Start
|
3'-end/Stop Codon
|
Length
|
Figure & Ref.
|
|---|
|
KSHV
| | | | | | | |
|
Transcript
|
FW
|
K1.5
|
α¢-vIL6/ORF2
|
17150
|
18200
|
1.0 Kbp
|
1A/F
†‡
|
| | |
K3.5
|
α¢-K4s
|
22125
|
22964
|
0.8 Kbp
|
1A
|
| | |
K4.5
|
T6.1
|
23596
|
29741
|
6.1 Kbp
|
1A
§
|
| | |
K4.7
|
T1.5
|
24080
|
25585
|
1.5 Kbp
|
1A
§
|
| | |
K11.5
|
α¢-ORF58/59
|
94589
|
96779
|
2.2 Kbp
|
1D
|
| | |
K12.5
|
ALT
|
120570
|
130546
|
10.0 Kbp
|
1E
†
|
| |
RC
|
K1.3
|
ALE
|
16969
|
21
|
17.0 Kbp
|
1A
†
|
| | |
K7.3
|
α¢-K7/PAN
|
29875
|
28615
|
1.3 Kbp
|
1A
|
| | |
K7.7
|
α¢-ORF50
|
74627
|
71616
|
3.0 Kbp
|
1C
*
|
|
Protein
|
FW
|
K1.5
|
α¢-vIL6/ORF2
|
17402
|
17599
|
43 or 54 AA
|
1A/F
†‡
|
| | |
K7.5
|
ARF-ORF30
|
50806
|
50856
|
16 AA
|
1B
§
|
| |
RC
|
K14.5
|
ARF-ORF75
|
132195
|
132452
|
85 AA
|
1E
|
|
EBV
| | | | | | | |
|
Transcript
|
RC
|
BELF3B
|
α¢-EBNA3B
|
85090
|
82960
|
2.1 Kbp
|
2D
|
| | |
BELF3C
|
α¢-EBNA3C
|
88511
|
87130
|
1.4 Kbp
|
2D
|
|
Protein
|
FW
|
BURF1
|
α¢-BPLF1
|
54414
|
55160
|
220 or 236 AA
|
2C/F
|
| | |
BKRF1.5
|
ARF-EBNA1
|
95708
|
96889
|
370 AA
|
2D
£
|
| |
RC
|
BALF3.5
|
ARF-BALF3
|
159401
|
159909
|
169 AA
|
2E
|
| | |
BALF0
|
(same)
|
164978
|
165055
|
25 AA
|
2E
|
- KSHV and EBV nucleotide positions are based on the sequences NC_009333 and NC_007605, respectively.
- Proposed gene names for KSHV and EBV follow viral nomenclature conventions described by Russo et al, 1996 [13], and Baer et al, 1984 [12], respectively. These gene names are indicated in bold.
- Temporary gene names are indicated through the text, including previously-published gene names.
- Unannotated/novel viral genes are cross-referenced to figures 1 and 2, indicated in bold.
- ¥5'-ends are less well detected by tiling array, and are therefore approximate values.
- §Taylor et al, 2005 [26]; £Ossevoort et al, 2009 [22]; †Chandriani and Ganem, 2010 [27]; ‡Chandriani et al, 2010 [28]; *Xu and Ganem, 2010 [18].
- Direct. = direction; Ref. = reference; α¢ = antisense; ARF = alternative reading frame; ORF = open reading frame; AA = length in amino acids; FW = forward strand; RC = reverse complement strand.
