From: A pilot study for channel catfish whole genome sequencing and de novo assembly
 | Assembler | K-value/Seed length | N50 (bp) | Maximum contig size (bp) | Average contig size (bp) | Number of contig |
---|---|---|---|---|---|---|
454 | Â | 10 | 8,497 | 28,747 | 3,387 | 290 |
 |  | 11 | 7,524 | 28,723 | 3,457 | 284 |
 |  | 12 | 8,164 | 26,457 | 3,520 | 279 |
 | Newbler | 13 | 8,670 | 31,603 | 3,478 | 283 |
 |  | 14 | 8,635 | 28,741 | 3,523 | 279 |
 |  | 15 | 8,164 | 35,657 | 3,487 | 282 |
 |  | 16 | 8,674 | 28,736 | 3,486 | 282 |
 |  | 25 | 653 | 4,678 | 437 | 1,787 |
 |  | 35 | 736 | 3,717 | 468 | 1,645 |
 |  | 45 | 744 | 3,958 | 505 | 1,409 |
 | Velvet | 55 | 731 | 3,515 | 513 | 1,213 |
 |  | 65 | 718 | 2,730 | 556 | 943 |
 |  | 75 | 691 | 3,060 | 574 | 757 |
 |  | 85 | 621 | 3,538 | 584 | 622 |
 |  | 95 | 595 | 3,291 | 600 | 488 |
 | MIRA |  | 1,331 | 8,705 | 856 | 1,254 |
 | CLC Genomics Workbench |  | 1,239 | 7,621 | 988 | 1,220 |
Illumina | Â | 21 | 4,196 | 23,500 | 1,242 | 954 |
 |  | 25 | 5,678 | 40,818 | 1,495 | 809 |
 |  | 29 | 6,319 | 35,339 | 1,703 | 705 |
 |  | 33 | 4,745 | 32,597 | 1,744 | 659 |
 |  | 37 | 4,507 | 22,638 | 1,725 | 637 |
 | Velvet | 41 | 4,355 | 15,944 | 1,712 | 602 |
 |  | 45 | 3,619 | 19,463 | 1,677 | 579 |
 |  | 49 | 3,605 | 18,297 | 1,849 | 511 |
 |  | 53 | 3,381 | 18,243 | 1,813 | 518 |
 |  | 57 | 3,025 | 15,219 | 1,631 | 552 |
 |  | 61 | 3,388 | 15,148 | 2,011 | 390 |
 |  | 30 | 2,296 | 13,010 | 1,027 | 1,013 |
 |  | 35 | 2,493 | 16,400 | 1,132 | 933 |
 |  | 40 | 3,647 | 20,868 | 1,439 | 716 |
 | ABySS | 45 | 4,463 | 20,727 | 1,681 | 578 |
 |  | 50 | 5,481 | 22,931 | 2,084 | 453 |
 |  | 55 | 5,459 | 23,830 | 2,316 | 401 |
 |  | 60 | 6,870 | 22,594 | 2,496 | 386 |
 |  | 64 | 4,285 | 16,790 | 1,722 | 524 |
 | CLC Genomics Workbench |  | 823 | 8,964 | 454 | 3,572 |