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Table 4 Identified targets of miR156 in the rice transcriptome.

From: Employing machine learning for reliable miRNA target identification in plants

Transcript Id Transcript annotation Expression Correlation SVR Score
LOC_Os08g41480.1 SAM domain containing protein, putative, expressed -0.92 4.494426
LOC_Os10g34064.1 retrotransposon protein, putative, unclassified -0.92 3.55511
LOC_Os08g38240.1 transposon protein, putative, CACTA, En/Spm sub-class, expressed -0.89 0.305948
LOC_Os02g01250.1 LSM domain containing protein, expressed -0.88 3.846277
LOC_Os03g10850.2 FAD-linked sulfhydryl oxidase ALR, putative, expressed -0.88 3.9567
LOC_Os03g24410.1 conserved hypothetical protein -0.88 4.39943
LOC_Os01g66940.1 kinase, pfkB family, putative, expressed -0.87 3.55511
LOC_Os03g55610.1 dof zinc finger domain containing protein, putative, expressed -0.87 3.73214
LOC_Os04g28090.1 MYB family transcription factor, putative, expressed -0.87 3.01288
LOC_Os05g34730.1 ethylene-responsive transcription factor ERF020, putative, expressed -0.87 3.55511
LOC_Os11g04730.1 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed -0.87 2.02559
LOC_Os11g37080.1 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed -0.87 3.73214
LOC_Os02g12580.1 OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed -0.86 0.591197
LOC_Os02g38200.1 dehydrogenase, putative, expressed -0.86 3.01288
LOC_Os02g51880.1 amine oxidase, putative, expressed -0.86 3.08791
LOC_Os03g55220.1 bHelix-loop-helix transcription factor, putative, expressed -0.86 1.31754
LOC_Os03g63730.1 RNA recognition motif containing protein, putative, expressed -0.86 0.742023
LOC_Os03g63730.1 RNA recognition motif containing protein, putative, expressed -0.86 2.63747
LOC_Os06g41384.1 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -0.86 3.08791
LOC_Os08g42620.1 zinc finger DHHC domain-containing protein, putative, expressed -0.86 3.01288
LOC_Os09g29980.2 transposon protein, putative, CACTA, En/Spm sub-class, expressed -0.86 3.01288
LOC_Os12g16130.1 transposon protein, putative, unclassified, expressed -0.86 0.656255
LOC_Os02g26140.1 microtubule-binding protein TANGLED1, putative, expressed -0.85 1.95761
LOC_Os06g02560.1 growth-regulating factor, putative, expressed -0.85 2.543472
LOC_Os10g03640.1 hypothetical protein -0.85 2.54657
LOC_Os10g41390.1 protein kinase domain containing protein, expressed -0.85 0.411063
LOC_Os12g44130.1 expressed protein -0.85 0.934949
LOC_Os10g41390.1 protein kinase domain containing protein, expressed -0.85 1.64854
LOC_Os12g09280.1 RNA polymerase subunit, putative, expressed -0.85 2.54657
LOC_Os01g08200.1 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed -0.84 2.5038
LOC_Os01g50340.1 transposon protein, putative, unclassified, expressed -0.84 1.22697
LOC_Os03g10930.1 ribosomal protein L51, putative, expressed -0.84 0.264129
LOC_Os03g17950.1 expressed protein -0.84 1.17905
LOC_Os06g35530.1 CGMC_GSK.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -0.84 0.996875
LOC_Os07g01540.1 Ser/Thr protein phosphatase family protein, putative, expressed -0.84 2.517799
LOC_Os08g02540.1 adenylate kinase, putative, expressed -0.84 2.51778
LOC_Os08g02730.1 plant protein of unknown function domain containing protein, expressed -0.84 1.78162
LOC_Os08g04780.1 amine oxidase, putative, expressed -0.84 0.111441
LOC_Os08g44380.1 L1P family of ribosomal proteins domain containing protein, expressed -0.84 2.54161
LOC_Os09g25620.1 CPuORF8 - conserved peptide uORF-containing transcript, expressed -0.84 2.08723
LOC_Os09g39020.1 N-rich protein, putative, expressed -0.84 1.58374
LOC_Os10g33230.1 RNA recognition motif containing protein, putative, expressed -0.84 1.95032
LOC_Os12g37380.1 RNA pseudouridine synthase, putative, expressed -0.84 2.08857
LOC_Os01g04730.1 ribosomal protein L24, putative, expressed -0.83 2.62583
LOC_Os01g09030.1 2-aminoethanethiol dioxygenase, putative, expressed -0.83 2.63747
LOC_Os01g16220.1 Sad1/UNC-like C-terminal domain containing protein, putative, expressed -0.83 1.68967
LOC_Os01g41880.1 hyaluronan/mRNA binding family domain containing protein, expressed -0.83 2.50997
LOC_Os03g27990.1 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -0.83 2.03837
LOC_Os03g28410.1 ribosomal protein S2, putative -0.83 1.94684
LOC_Os04g30680.1 conserved hypothetical protein -0.83 1.94949
  1. The listed targets scored at least 0.8 inverse expression correlation or higher.