Figure 2
From: Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis
Diversity of mussel transcripts containing the C1q domain. Cladistic analysis of 65 C1q domains representing a subset of the 168 total sequences identified in Mytibase. This highly diversified non redundant subset was produced with NCBI BlastClust (-p F -L .5 -b T -S 40). The cladogram is based on the Neighbor-Joining method (1000 bootstrap replicates). The evolutionary distances were computed by using the JTT substitution matrix (number of amino acid substitutions for each of the 406 sites).