Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates

BMC Genomics

Table 1 Strains used in this study.

Strain	Location of Isolation	Clinical Details	Avg. Read Coverage	No. of Contigs	No. Bases in Contigs	% GC	% of RH4 Genome	NCBI Accession No.	Source
7169	Buffalo, NY, USA	OME; Child	182.3	35	1,903,901	41.7	102.2	AERC01000000**	Howard Faden
103P14B1	Buffalo, NY, USA	COPD Exacerbation; Adult	19.4	99	1,961,697	41.7	105.3	AERE01000000**	Timothy Murphy
12P80B1	Buffalo, NY, USA	COPD Exacerbation; Adult	19.9	53	1,814,430	41.5	97.4	AERG01000000**	Timothy Murphy
46P47B1	Buffalo, NY, USA	COPD Exacerbation; Adult	20.6	69	1,856,042	41.6	99.6	AERF01000000**	Timothy Murphy
035E	Dallas, TX, USA	OME; Child	56.8	42	1,776,416	41.7	95.3	AERL01000000**	[19]
BC1	Pittsburgh, PA, USA	Tracheal Aspirate, Bronchiolitis; Child	40.2	43	1,954,090	41.4	104.8	AERH01000000**	Robert Wadowsky
BC7	Pittsburgh, PA, USA	Middle Ear, OME; Child	28.7	37	1,904,293	41.5	102.2	AERI01000000**	Robert Wadowsky
BC8	Pittsburgh, PA, USA	Sinus Wash, Sinusitis; Child	43.8	32	1,912,542	41.6	102.6	AERJ01000000**	Robert Wadowsky
CO72	Nijmegen, The Netherlands	Middle ear fluid (OME); Child	37.1	25	1,947,635	41.4	104.5	AERK01000000**	Peter Hermans
101P30B1	Buffalo, NY, USA	COPD Exacerbation; Adult	33.2	26	1,866,092	41.7	100.1	AEPC01000000**	Timothy Murphy
RH4	Denmark	Blood Isolate	Published in [13]	1	1,863,286	41.7	N/A	CP002005***	[18]
ATCC 43617	Belgium	Transtracheal aspirate, chronic bronchitis; Coal miner	NP*	41	1,913,584	41.7	102.7	AX067426* to AX067466*	ATCC

OME = Otitis media with effusion. * = Not published; the unpublished genome sequence of ATCC 43617 was deposited into GenBank without annotations describing its sequencing methods. ** The accession numbers listed in Table 1 reflect the first version of these whole genome shotgun projects as well as the version current at the time of manuscript submission; master accession numbers for these strains are available in the Methods. *** Denotes original GenBank accession numbers for previously sequenced genomes that were re-annotated for inclusion in this study.

ISSN: 1471-2164