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Table 1 Mitochondrial genome profile and nucleotide composition of C. sinicu s.

From: Distinctive mitochondrial genome of Calanoid copepod Calanus sinicus with multiple large non-coding regions and reshuffled gene order: Useful molecular markers for phylogenetic and population studies

Feature strand Position Length Start Stop AT % GC-skew AT-skew intergenic nt2
rrnL 3 H 2244 - 3382 1139    71.7 0.0567 0.0126 >2959(LNR1)
trnV H 3383 - 3447 65    83.1 -0.0888 0.0734 3
trnD H 3457 - 3518 62    80.6 0.165 0.000 9
trnT H 3531 - 3593 63    74.6 -0.126 -0.0643 12
trnS2 L 3594 - 3650 57    73.7 0.202 0.0475 0
cox1 L 3660 - 5207 1548 ATA TAA 59.0 0.0439 -0.190 9
nad4L H 5336 - 5671 336 ATA TAG 61.9 0.0919 -0.202 128(LNR2)
cytb L 5751 - 6887 1137 ATG TAA 60.2 -0.0050 -0.249 79
nad6 L 6898 - 7377 480 ATT TAG 62.3 0.0822 -0.149 10
rrnS 3 L 7429 - 8082 654    73.1 0.264 0.0369 51
trnG L 8083 - 8146 64    87.6 0.000 0.000 3
nad1 L 8147 - 9063 917 ATA TA1 62.5 0.000 -0.174 0
trnF L 9064 - 9126 63    66.6 0.237 0.000 0
trnI L 9131 - 9193 63    58.7 0.153 0.0801 4
nad5 H 9231 - 10954 1724 ATT TA1 59.5 0.0272 -0.109 37
trnH H 10955 - 11017 63    69.8 0.369 0.0917 0
trnA H 12788 - 12851 64    67.2 0.0488 -0.164 1770(LNR3)
trnY H 12852 - 12912 61    60.6 0.000 -0.0264 0
trnE L 12908 - 12971 64    68.7 0.000 0.0451 -5
trnQ L 13002 - 13067 66    77.5 0.604 -0.102 30
trnL1 L 13080 - 13143 64    80.1 0.431 0.104 12
trnP L 13178 - 13240 63    76.2 0.202 -0.0420 34
trnM L 13246 - 13309 64    68.7 -0.0990 0.0917 5
trnK L 13312 - 13374 63    68.2 -0.101 0.0235 2
trnW L 13376 - 13439 64    78.1 -0.142 0.0807 1
trnS1 L 13439 - 13498 60    77.0 -0.144 -0.0208 -1
trnN L 13498 - 13565 68    61.8 -0.154 0.0485 -1
cox2 L 13571 - 14275 705 ATT TAA 62.6 0.0749 -0.166 5
nad3 H 14338 - 14691 354 ATT TAA 61.3 0.183 -0.318 62
cox3 L 14794 - 15585 792 ATG TAA 57.1 0.0536 -0.208 102(LNR4)
nad4 H 16357 - 17658 1302 ATA TAA 59.9 -0.0697 -0.142 771(LNR5)
trnL2 H 17663 - 17728 66    69.7 0.102 0.174 4
nad2 H 17729 - 18697 969 ATA TAA 61.9 -0.0761 -0.202 0
atp8 H 18870 - 19031 162 ATT TAA 70.4 -0.0811 -0.122 172(LNR6)
atp6 H 19034 - 19744 711 ATG TAG 59.5 -0.0963 -0.126 2
  1. Genes were labelled as outlined in the abbreviations section. AT skew = (A% - T%)/(A% + T%); GC skew = (G% - C%)/(C% + G%).
  2. 1 truncated stop codon, which is possibly completed via post-transcriptional adenylation;
  3. 2 unassigned nucleotides (positive values) or overlapped nucleotides (negative values) between two adjacent genes with large non-coding regions outlined;
  4. 3 initiation or termination positions of ribosomal RNAs defined by adjacent gene boundaries.