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Table 3 Motif sequences identified by MEME tools

From: Genome-wide identification, classification and analysis of heat shock transcription factor family in maize

Motif

Multilevel consensus sequence

1

PKYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANECFLRGQKHLLKNIHRRKP

2

NVLMQEVVKLRQQQQTTKWQMQAMEQRLQHMEQRQQQMMSFLAKVMQNP

3

PFLTKTYDMVDDPATDHVISWNEDN

4

SFVRQLNTYGFRKVDPDRWEFANECFLRGQKHLLCNIHRRK

5

SFVVWNPHEFARDLL

6

AGSCPAYADLMEENERLRRENARLTRELAHMKKLCNNIIYFMSNYVDPQQPDAAKAM

7

SGPAPFLTKTYQMVCDPATDHVISWGPCG

8

YFGYEEEIERLKRDK

9

AEINDDFWEQFLTEGPGCCE

10

EMRKELIDAISKKRRRPIDDC

11

SFVVWDPHAFSQTLL

12

YFKHNNFS

13

DNMDVLTEQMGYLSS

14

FLNQLVQQQRRSNWWNDDGNRKRRFQALEHGPVDDQETSGGGAQIIQYCPPVPETSNQPIPANEAFCSTPAQPVSSPALEMPMDV

15

DEDKCVKLFGVSIGDKRMRDH

16

QPWPIYRPRPVYHPIRPCNG

17

PQYQQQSVGSCVEVG

18

GGGGGGGG

19

AAAAAA

20

PMEGLHEVGPP

21

ASLDGQIVKYQPMINEAAK

22

TSFYDDHSSTSKQEMGNLLNQHFSDKLKLGLCPAMTESNIITLSTQSSHEDNGSPHGKHPDCDMMGMECLPLVPQMMELSDTGTSICPSKSVCFTPPINDDGFLPCHLNLTLASCPMDVDKSQIPDANGNTID

23

RCEEAAASERPIKMIRIGEPWIGVPSSGP

24

YDHPWLEQDCQMEAQQNCKNPQYADVIT

25

ELENLALNIQGLGKGKID

26

PEADDMGTGSSLEQGSPVLFEPQDPVEFLIDGIPSDLESSAVDAHGLIAPQDI

27

MDADDDERIWGVDASAALQSSCSGTSQQAYGSHVSDPYLMDIANKPEKFWELDFQALDDGDLQLDKCVIDDPALQQQ

28

MASNNVGTFDSTGNDFTDTSALCEWDDMDIFGGELEHILQQPEQDFQVDP

29

SPTYSGEEQVISSNS

30

AMLRKILKLDSSHRFESMGNSDN

  1. Numbers correspond to the motifs described in Figure 4.