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Table 2 454 Sequencing data from cDNA libraries of four oat genotypes

From: Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

Genotype

Total reads

Assembled reads

# contigs

Total contig length (Mb)

Mean contig length (bp)

length SD (bp)

Minimum contig size (bp)

Maximum contig size (bp)

Average coverage (x)

Ogle1040

283,478

231,057

32,245

18.09

561

205

41

2217

4.1

TAM O-301

381,397

307,751

42,147

24.70

586

217

40

4303

4.0

Gem

180,447

137,743

23,681

14.20

598

238

43

4229

3.1

HiFi

235,589

188,015

29,036

16.40

564

220

42

4416

3.6

Total

1,080,911

864,566

127,109

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