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Table 3 Insertion sequences found in safe strains.

From: The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli

IS

Gene

W

K-12

B

Crooks

IS1

insAB

0 (0)

7 (0)

28 (0)

19 (0)a

IS1 H

insXY

1 (0)

0 (0)

0 (0)

0 (1)

IS2

insCD

0 (0)

6 (1)

0 (2)

0 (0)

IS3

insEF

3 (0)

5 (2)

5 (2)

1 (0)

IS4

insG

0 (0)

1 (0)

1 (0)

0 (0)

IS5

insH

0 (0)

11 (0)

0 (0)

2 (0)

IS30

insI

0 (0)

3 (1)

0 (1)

4 (0)

IS91

 

1 (0)b

0 (0)

0 (0)

0 (0)

IS150

insJ

2 (0)b

1 (0)

4 (1)

0 (0)

IS186

insL

0 (0)

3 (0)

5 (0)

3 (0)

IS600

 

0 (0)

0 (1)

1 (0)

0 (0)

IS609

tnpAB

4 (0)

1 (0)c

1 (0)

0 (2)

IS621

 

4 (1)

0 (0)

0 (0)

0 (0)

IS911

insO

2 (0)

0 (3)

1 (2)

0 (0)

ISEcB1

 

0 (0)

0 (0)

1 (0)

0 (0)

ISEhe3

insX

0 (0)

0 (1)d

0 (1)

0 (1)

ISEc14

 

0 (0)

0 (0)

0 (0)

3 (0)

ISEc17

 

0 (0)

0 (0)

0 (0)

3 (0)

ISZ'

insZ

0 (0)

1 (0)

0 (0)

0 (0)

ISSd1

 

0 (0)

0 (0)

0 (0)

0 (2)

Total

 

16 (1)

38 (9)

47 (9)

35 (6)

  1. a Includes IS1 family elements
  2. b Found on plasmid pRK1
  3. c Annotated as predicted transposase in K-12 (MG1655) genome (locusTag b1432). Predicted to be IS609 by ISFinder
  4. d Annotated as ISX in K-12 (MG1655) genome. Predicted to be ISEhe3 by ISFinder
  5. Genes encoded on insertion sequences are noted; the number of additional pseudogenes is noted in brackets. Strains are W (ATCC 9637), K-12 (MG1655), B (REL606), Crooks (ATCC 8739).