Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018

Table 3 EA 2018 putative promoter variations related to key phenotypes

Gene locus in EA 2018	Gene locus in ATCC 824	Gene variation sites in EA 2018	Gene variation sites in ATCC 824	Product Name
Solvent formation related genes
CEA_G0028	CAC0028	-12(T)	-12(C)	Hydrogen dehydrogenase
CEA_P0034	CA_P0035	-84(T)	-84(C)	Aldehyde-alcohol dehydrogenase, ADHEII
Substrate utilization related genes
CEA_G3043	CAC3037	-80(T)	-80(C)	Catabolite control protein, LacI family transcriptional regulator
CEA_G3455	CAC3451	-84(T)	-84(G)	Sugar/Na+(H+) simporter
CEA_G1086	CAC1075	-56(T)	-56(G)	Beta-glucosidase family protein
CEA_G1365	CAC1351	-97(T)	-97(C)	Periplasmic sugar-binding protein
Sporulation related genes
CEA_G1634	CAC1620	-136(T)	-136(G)	Small acid-soluble spore protein
CEA_G3742	CAC3735	-(8-7)(-)	-7(C)	Predicted RNA-binding protein Jag, SpoIIIJ-associated

Numbers in gene or protein variation sites lines indicated the variation sites in genes; the letters in bracket means the corresponding variation bases or amino acid; the symbol "-" means deletion in genes.

ISSN: 1471-2164