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Table 4 List of differentially regulated genes in key functional groups.

From: Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018

Gene locus in EA 2018 Gene locus in ATCC 824 9 h (Log2Ratio 2018/824) 13 h (Log2Ratio 2018/824) 17 h (Log2Ratio 2018/824) 21 h (Log2Ratio 2018/824) 24 h (Log2Ratio 2018/824) 30 h (Log2Ratio 2018/824) Product Name
Carbohydrate transportant and metabolism      
CEA_G0343 CA_C0332 -2.97436 -3.22501 -2.37758 -2.08064 -2.57556 -1.49158 Beta-mannanase
CEA_G0501 CA_C0490 2.331505 2.410311 2.244172 2.361906 2.703307 2.474026 sugar kinase, N-terminal region - uncharacterized protein
CEA_G0552 CA_C0539 -3.20909 -3.00324 -2.93013 -2.29917 -3.34939 -3.01922 ChW repeat-containing mannanase ManB
CEA_G0553 CA_C0540 -3.097 -3.03398 -2.7227 -2.28306 -3.3665 -2.72934 ChW repeat-containing mannanase ManB
CEA_G1677 CA_C1664 1.744408 2.013214 2.53088 1.134795 1.816259 2.062687 glycogen phosphorylase
CEA_G2012 CA_C1997 3.052977 3.503142 3.004392 2.8712 2.075025 1.372718 glycosyltransferase
CEA_G2022 CA_C2007 3.179932 3.308867 2.812136 2.509044 1.656072 1.958591 glycosyltransferase
CEA_G2528 CA_C2514 2.588809 2.748177 3.625871 4.329215 2.708288 1.042021 Beta galactosidase
CEA_G2815 CA_C2807 2.40568 2.124155 2.476058 2.653992 2.808752 1.737289 endo-1,3(4)-beta-glucanase family protein 16
CEA_G2818 CA_C2810 1.835243 2.287891 2.800041 3.929157 3.739976 4.256289 glucoamylase family protein
CEA_G3051 CA_C3045 -2.41601 -2.05151 -2.19775 -2.37262 -2.3321 -2.16444 PHP family hydrolase
CEA_G3060 CA_C3054 -3.63818 -4.38617 -4.64833 -5.02922 -5.12371 -3.50751 phosphoheptose isomerase
CEA_G3426 CA_C3422 -1.07396 -2.79221 -3.22016 -2.15086 -2.69786 -1.37931 sugar:proton symporter (xylulose)
CEA_P0052 CA_P0053 2.477697 2.868013 3.649329 3.695172 3.721454 5.987476 xylanase
CEA_P0053 CA_P0054 4.25084 2.735168 2.447001 3.424303 3.598697 5.185082 xylanase/chitin deacetylase family protein
CEA_P0065 CA_P0066 3.062167 1.145145 2.159875 4.902259 3.81378 2.953822 mannose-specific phosphotransferase system component IIAB
CEA_P0066 CA_P0067 2.925021 1.579742 2.174524 4.883877 3.683632 2.826095 mannose/fructose-specific phosphotransferase system component IIC
CEA_P0067 CA_P0068 3.006142 1.74298 2.611356 4.717371 3.502957 2.456002 mannose-specific phosphotransferase system component IID
CEA_P0115 CA_P0116 1.777221 2.342324 2.902238 3.126694 3.321994 5.378643 xylanase
Amino acid transport and metabolism      
CEA_G0180 CA_C0176 2.56498 2.063235 2.36635 2.08086 3.251555 3.705152 oligopeptide-binding protein, periplasmic component
CEA_G0327 CA_C0316 -4.09229 6.429377 7.957548 6.881528 4.185199 2.037144 ornithine carbomoyltransferase
CEA_G0390 CA_C0380 -4.23921 5.06975 5.365591 5.142555 3.394778 2.099342 periplasmic amino acid-binding protein
CEA_G0984 CA_C0973 -4.67305 6.390879 8.78089 7.141168 3.889621 2.522783 argininosuccinate synthase
CEA_G0985 CA_C0974 -4.03279 6.033303 8.738086 7.66813 4.662246 3.462605 argininosuccinate lyase
CEA_G2392 CA_C2377 -4.81354 -4.50847 -4.89131 -5.25303 -5.6598 -6.94396 oligopeptide ABC-type transporter, periplasmic binding component (frameshift)
CEA_G2403 CA_C2388 -3.653 6.58659 9.490741 7.214547 3.839977 1.277684 acetylornithine aminotransferase
CEA_G2405 CA_C2390 -4.029 7.044851 9.332151 8.593887 5.225523 1.729156 N-acetyl-gamma-glutamyl-phosphate reductase
CEA_G2406 CA_C2391 -3.63924 6.659273 9.430206 8.041522 4.889782 1.658329 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
CEA_G2531 CA_C2517 2.601974 2.875402 3.244092 4.199853 5.407919 5.659197 extracellular neutral metalloprotease, NPRE
CEA_G3059 CA_C3053 -3.80847 -4.46351 -4.85998 -5.20027 -5.64176 -4.16398 histidinol phosphatase related enzyme
CEA_G3625 CA_C3618 -2.33371 4.975742 4.579403 4.356899 3.79613 1.400104 ABC-type polar amino acid transport system, ATPase component
CEA_G3626 CA_C3619 -2.49499 4.94909 4.797836 4.831871 4.227636 1.349231 amino acid ABC transporter permease
CEA_G3627 CA_C3620 -2.79225 4.869307 2.77014 4.039679 3.923914 1.658129 amino acid ABC transporter periplasmic-binding protein
CEA_G3629 CA_C3622 3.744723 1.616914 -1.60643 -2.30924 -3.70552 -4.20925 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase
CEA_G3648 CA_C3641 3.877563 5.273677 6.532841 7.05381 6.150331 2.645978 oligopeptide ABC transporter, ATPase component
CEA_G3649 CA_C3642 3.862767 5.064748 6.213521 7.100308 6.123778 2.328286 oligopeptide ABC transporter, ATPase component
CEA_G3651 CA_C3644 3.540737 4.731217 4.796332 6.751584 6.151055 3.301733 oligopeptide ABC transporter, permease component
Lipid transport and metabolism       
CEA_P0077 CA_P0078 -1.03663 -2.39938 -2.90422 -5.61457 -6.37659 -6.669 acetyl-CoA acetyltransferase
CEA_G0500 CA_C0489 2.843362 2.727643 3.104514 2.258672 2.789674 2.994569 4'-phosphopantetheinyl transferase
CEA_G2024 CA_C2009 3.02793 3.412819 2.753976 2.880761 2.465438 1.317947 3-hydroxyacyl-CoA dehydrogenase
CEA_G2027 CA_C2012 3.139119 3.519089 2.760385 2.466674 1.747722 1.295802 enoyl-CoA hydratase
CEA_G2023 CA_C2008 3.21547 3.393795 2.65468 2.624962 1.849978 1.696553 3-oxoacyl-(acyl-carrier-protein) synthase
CEA_G0825 CA_C0814 3.447389 2.690101 3.341654 3.492821 2.738719 2.617536 3-oxoacyl-
CEA_G3630 CA_C3623 3.78405 1.698615 -1.62094 -2.13197 -3.66189 -4.47732 2-hydroxyglutaryl-CoA dehydratase activator
Coenzyme transport and metabolism       
CEA_G2539 CA_C2526 -5.80423 -4.29934 -2.18936 -3.20732 -2.04208 -2.09088 6-pyruvoyl-tetrahydropterin synthase related protein
CEA_G0110 CA_C0109 -1.93293 -1.10289 -4.51818 -4.22606 -3.40598 -5.95312 sulfate adenylyltransferase subunit 2
CEA_G2240 CA_C2226 1.175604 1.630568 1.933437 3.44313 4.132037 3.011011 branched-chain amino acid aminotransferase
CEA_G2817 CA_C2809 1.909506 2.362089 1.59545 3.297164 2.183049 1.029092 HD superfamily hydrolase
CEA_G2037 CA_C2022 2.45013 1.945668 2.521958 2.427533 2.187431 3.238565 molybdopterin biosynthesis protein MoaB
CEA_G3633 CA_C3626 2.627562 1.339719 -1.38437 -2.32524 -3.57634 -5.06491 GTP cyclohydrolase I
CEA_G2036 CA_C2021 2.849463 2.144804 2.666979 4.297463 3.319713 3.863173 molybdopterin biosynthesis protein MoeA
CEA_G2009 CA_C1994 3.136184 3.75827 3.408469 2.84809 1.881193 1.268359 molybdopterin biosynthesis protein MoaB
CEA_G2035 CA_C2020 3.146626 3.515592 5.182665 4.677354 4.692789 4.012931 molybdopterin biosynthesis protein MoeA
CEA_G3631 CA_C3624 3.416604 1.490697 -1.38827 -2.23319 -3.83641 -6.15768 6-pyruvoyl-tetrahydropterin synthase
Signal transduction        
CEA_G0078 CA_C0078 -4.99228 -8.71284 -9.43594 -9.21854 -9.14927 -7.97564 putative accessory gene regulator protein
CEA_G3328 CA_C3325 -1.00804 -2.85267 -4.3502 -5.19446 -4.39209 -5.05262 periplasmic amino acid binding protein
CEA_G0921 CA_C0909 -2.84748 -1.88833 -1.93256 -1.50557 -2.64087 -2.89144 methyl-accepting chemotaxis protein
CEA_G2085 CA_C2071 2.455498 2.263411 2.413649 1.803983 2.20351 2.550339 Spo0A protein
CEA_G2422 CA_C2407 3.784844 1.475039 1.927948 1.823945 2.526403 2.502499 CheY-like domain-containing protein
CEA_G0448 CA_C0437 2.192653 1.378372 2.665966 1.827148 2.252286 2.342264 sensory transduction histidine kinase
CEA_G3025 CA_C3019 -2.65448 3.491201 3.449102 2.735229 1.336433 1.266833 sensory transduction protein
CEA_G0296 CA_C0289 1.792323 1.978035 2.438903 2.751395 3.435751 3.052853 response regulator
CEA_G2782 CA_C2774 1.625932 1.895382 3.060796 2.846554 2.092881 1.726376 methyl-accepting chemotaxis protein
CEA_G0334 CA_C0323 3.362504 2.662176 2.652177 3.222052 4.952742 2.037345 sensory transduction histidine kinase
CEA_G3627 CA_C3620 -2.79225 4.869307 2.77014 4.039679 3.923914 1.658129 amino acid ABC transporter periplasmic-binding protein
CEA_G0390 CA_C0380 -4.23921 5.06975 5.365591 5.142555 3.394778 2.099342 periplasmic amino acid-binding protein
Energy production and convertion       
CEA_G1083 CA_C1072 3.271648 3.230747 4.254617 2.59071 2.723209 3.766376 Fe-S oxidoreductase
CEA_G2012 CA_C1997 3.052977 3.503142 3.004392 2.8712 2.075025 1.372718 glycosyltransferase
CEA_G2015 CA_C2000 2.963078 3.638083 2.745804 2.983214 2.587284 2.204476 indolepyruvate oxidoreductase subunit beta
CEA_G2016 CA_C2001 2.832561 3.688549 3.007107 3.355002 2.718563 2.206461 indolepyruvate ferredoxin oxidoreductase, subunit
CEA_G2022 CA_C2007 3.179932 3.308867 2.812136 2.509044 1.656072 1.958591 glycosyltransferase
CEA_G2025 CA_C2010 3.282342 3.533526 2.84142 3.003615 2.50221 2.005231 Fe-S oxidoreductase
CEA_G2555 CA_C2542 8.22595 5.876659 5.423124 5.135223 4.224852 4.280766 FAD/FMN-containing dehydrogenase
CEA_G2556 CA_C2543 8.451735 6.100494 5.401602 5.24343 4.426238 3.987954 electron-transferring flavoprotein large subunit
CEA_G2557 CA_C2544 7.904188 6.040402 4.848558 4.578106 4.214698 3.969443 electron-transferring flavoprotein small subunit
CEA_G3411 CA_C3408 -2.71993 -3.64684 -4.53359 -4.7967 -4.89809 -4.45863 NADH oxidase
Cell mobility         
CEA_G0921 CA_C0909 -2.84748 -1.88833 -1.93256 -1.50557 -2.64087 -2.89144 methyl-accepting chemotaxis protein
CEA_G3572 CA_C3565 1.783589 1.966743 1.626123 1.303128 1.522492 1.56009 cell adhesion domain-containing protein
CEA_G3091 CA_C3085 1.669031 1.879947 1.641572 3.329325 2.811493 2.558158 TPR repeat-containing cell adhesion protein
CEA_G3092 CA_C3086 1.689695 1.7646 1.823344 3.167841 2.629106 2.423856 cell adhesion domain-containing protein
CEA_G2782 CA_C2774 1.625932 1.895382 3.060796 2.846554 2.092881 1.726376 methyl-accepting chemotaxis protein
CEA_P0159 CA_P0160 2.878477 3.739495 3.515178 3.50976 3.19802 3.547315 cell-adhesion domain-containing protein