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Table 5 DNA and transcriptional variations of putative promoter variations between EA 2018 and ATCC 824

From: Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018

Gene locus in EA 2018 Gene locus in ATCC 824 Gene varition site in 2018 Gene varition site in 824 9 h (Log2Ratio 2018/824) 13 h (Log2Ratio 2018/824) 17 h (Log2Ratio 2018/824) 21 h (Log2Ratio 2018/824) 24 h (Log2Ratio 2018/824) 30 h (Log2Ratio 2018/824) Product Name
CEA_G0334 CA_C0323 -96(A) -(97-96)(-) 3.362504 2.662176 2.652177 3.222052 4.952742 2.037345 Sensory transduction histidine kinase
CEA_G0390 CA_C0380 -135,-131(A,A) -135,-131(T,T) -4.23921 5.06975 5.365591 5.142555 3.394778 2.099342 Periplasmic amino acid-binding protein
CEA_G2504 CA_C2490 -(13-12),-53(-,T) -12,-(54-53)(C,-) -2.39555 -3.35613 -3.80832 -2.2032 -2.7562 -1.10185 Xre family DNA-binding domain and TPR repeats containing protein
CEA_G3701 CA_C3694 -43(T) -43(C) 4.045439 3.430925 3.859781 3.69948 4.131629 3.75554 TPR-repeat-containing protein
CEA_P0034 CA_P0035 -84(T) -84(C) 3.331902 5.740285 6.007483 8.056546 6.576379 7.664691 Aldehyde-alcohol dehydrogenase, AdhEII
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BMC Genomics

ISSN: 1471-2164

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