Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries

Table 5 Analyses of putative deletions for their effects on gene annotations

Breakpoints*	Transcript(s)	Modification	Protein
8_4940538-4940787	ENSGALT00000005255	Truncation last exon	Flavin_mOase
14_14073018-14073274	ENSGALT00000003325	Truncation exon 9 or 5' deletion exon 10	PDZ domain
3_78504957-78505263	ENSGALT00000025445	5' deletion in last exon	Ionic channel
9_6501514-6501912	ENSGALT00000008864/40988	5' deletion in exon 4	Transcription factor
1_70753183-70753846	ENSGALT00000022933	Truncation exon 10	EGF-like
1_13962380-13963075	ENSGALT00000013428	Truncation exon 2	Unknown
11_748787-749698	ENSGALT00000002076/23151	Truncation last exon	ADP-ribosylation factor-like

Putative deletions with breakpoints predicted in exons were further analyzed in Ensembl [26]. Involved transcripts and protein functions were identified and putative modifications recorded.
*Breakpoints are estimated from the mapping results and might differ a few tens of bases from the exact genomic locations.

ISSN: 1471-2164