Table 5 Repetitive transposon classification
From: De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
Transposon class | Number of elements | Total length | Percentage of sequence |
|---|---|---|---|
Retroelements | 416 | 51,070 | 0.17% |
   LINE/L1 | 38 | 2,458 | 0.01% |
   LTR | 378 | 48,612 | 0.16% |
Copia | 183 | 21,750 | 0.07% |
Gypsy | 195 | 26,862 | 0.09% |
DNA transposons | 269 | 22,699 | 0.07% |
   hobo-Activator | 20 | 2,022 | 0.01% |
   Tc1-IS630-Pogo | 1 | 46 | 0.00% |
   En-Spm | 180 | 13,395 | 0.04% |
   MuDR-IS905 | 33 | 1,834 | 0.00% |
   Harbinger | 6 | 368 | 0.00% |
   Rolling circle Helitrons | 29 | 5,034 | 0.02% |