Table 5 Tool Performance Across 19 Proteins in Each of the 1990 Core Ortholog Groups
From: Genome-wide protein localization prediction strategies for gram negative bacteria
Test | Tool | Groups with no match | Disagree with Curation | Groups with match | Disagree with Curation | Groups with mixed predictions | Curated as having Match |
|---|---|---|---|---|---|---|---|
Sig Pep cleaved by LspA | LipoP 1.0 | 1911 | 0 | 49 | 0 | 30 | 61 |
Sig Pep cleaved by LepB | SignalP-NN 3.0 | 1482 | 4 | 158 | 39 | 350 | 169 |
Sig Pep cleaved by LepB | SignalP-Hmm 3.0 | 1447 | 1 | 247 | 89 | 296 | Â |
Sig Pep recognized by TAT | TatP 1.0 | 1962 | 0 | 5 | 2 | 23 | 5 |
Inner membrane protein | TmHmm 2.0 | 1417 (1)1 | 1 | 390 (103) | 21 | 183 (29) | 403 (133) |
Inner membrane protein | Phobius | 1505 (14) | 14 | 349 (72) | 7 | 136 (47) | Â |
Outer membrane protein | Bomp | 1934 | 11 | 13 | 2* | 43 | 32 |