Skip to main content

Table 1 MetaPhyler performance using fewer and fewer training dataset

From: Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Exclude Training 60bp 300bp
  Genus Family Order Class Phylum Genus Family Order Class Phylum
Genome 90.72
33.45
97.18
54.22
98.10
59.59
99.11
70.72
99.56
75.30
97.90
52.39
99.14
70.17
99.15
78.09
99.34
84.52
99.64
91.18
Genus   77.15
16.47
86.32
23.16
94.92
34.60
96.72
43.48
  92.55
31.06
95.71
48.63
98.23
64.22
98.84
77.35
Family    63.62
13.19
90.31
24.64
94.65
34.99
   85.25
26.65
96.78
53.15
97.66
69.42
Order     80.04
17.73
90.29
27.80
    93.69
39.97
96.26
58.86
Class      78.16
16.59
     90.94
42.62
  1. MetaPhyler phylogenetic classification performance on 60bp and 300bp simulated metagenomic reads. For each prediction, the top and bottom numbers are precision and sensitivity in percentage, respectively. Different taxonomic levels are excluded when evaluating the classification, e.g., ’Genus’ means genes that have the same genus label as the query read are excluded from the reference training dataset.