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Table 1 MetaPhyler performance using fewer and fewer training dataset

From: Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Exclude Training

60bp

300bp

 

Genus

Family

Order

Class

Phylum

Genus

Family

Order

Class

Phylum

Genome

90.72

33.45

97.18

54.22

98.10

59.59

99.11

70.72

99.56

75.30

97.90

52.39

99.14

70.17

99.15

78.09

99.34

84.52

99.64

91.18

Genus

 

77.15

16.47

86.32

23.16

94.92

34.60

96.72

43.48

 

92.55

31.06

95.71

48.63

98.23

64.22

98.84

77.35

Family

  

63.62

13.19

90.31

24.64

94.65

34.99

  

85.25

26.65

96.78

53.15

97.66

69.42

Order

   

80.04

17.73

90.29

27.80

   

93.69

39.97

96.26

58.86

Class

    

78.16

16.59

    

90.94

42.62

  1. MetaPhyler phylogenetic classification performance on 60bp and 300bp simulated metagenomic reads. For each prediction, the top and bottom numbers are precision and sensitivity in percentage, respectively. Different taxonomic levels are excluded when evaluating the classification, e.g., ’Genus’ means genes that have the same genus label as the query read are excluded from the reference training dataset.
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BMC Genomics

ISSN: 1471-2164

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