Skip to main content

Table 4 Running time comparison of different tools

From: Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Dataset

CPU hours

 

MetaPhyler

PhymmBL

MEGAN

WebCarma

70K reads

8 hours

4 days

34 days

24 hours

  1. On a single 2.4GHz processor, the computation time (CPU hours) used by MetaPhyler, PhymmBL and MEGAN for analyzing 70K 300bp simulated sequences. CPU hours for WebCarma are calculated using its web server.