CAMBer: an approach to support comparative analysis of multiple bacterial strains

BMC Genomics

Table 1 M. tuberculosis dataset

strain ID	source	resist.	# of genes	lab.
H37Rv	NC_000962	DS	3988(26)	S
H37Ra	NC_009525	DS	4034(22)	C
F11	NC_009565	DS	3941(5)	B
KZN 4207(T)	PLoS One. [16]	DS	3902(47)	T
KZN 4207(B)	Broad Institute	DS	3996(4)	B
KZN 1435	Broad Institute	MDR	4059(10)	B
KZN V2475	PLoS One. [16]	MDR	3893(3792)	T
KZN 605	Broad Institute	XDR	4024(26)	B
KZN R506	PLoS One. [16]	XDR	3902(46)	T

Details for input strains for the M. tuberculosis case study. The first number in column called ’# of genes’ corresponds to the number of annotated genes, the second (in brackets) corresponds to the number of genes excluded in the study due to unusual start or stop codons or sequence length not divisible by three. In order to avoid ambiguity in naming the same strain sequenced by two labs we introduce an additional suffix (T or B). Characters in last column, called ’lab.’, describe the sequencing laboratories: B - The Broad Institute, T - Texas A&M University, C - Chinese National Human Genome Center at Shanghai, S - Sanger Institute.

ISSN: 1471-2164