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Table 7 E. coli dataset

From: CAMBer: an approach to support comparative analysis of multiple bacterial strains

strain ID source (GenBank ID) # of genes genome length lab.
O26:H11 11368 AP010953 5363(4) 5697240 University of Tokyo
O157:H7 EC4115 CP001164 5315(0) 5572075 J. Craig Venter Institute
O157:H7 EDL933 AE005174 5348(10) 5528445 University of Wisconsin
O157:H7 TW14359 CP001368 5263(6) 5528136 University of Washington
O157:H7 Sakai BA000007 5360(5) 5498450 GIRC
O103:H2 12009 AP010958 5053(4) 5449314 University of Tokyo
O55:H7 CB9615 CP001846 5014(0) 5386352 Nankai University
O111:H 11128 AP010960 4971(4) 5371077 University of Tokyo
042 FN554766 4792(18) 5241977 Welcome Trust Sanger Institute
CFT073 AE014075 5378(4) 5231428 University of Wisconsin
ED1a CU928162 4914(4) 5209548 Genoscope
UMN026 CU928163 4825(4) 5202090 Genoscope
55989 CU928145 4762(4) 5154862 Institute Pasteur and Genoscope
ETEC H10407 FN649414 4696(3) 5153435 Welcome Trust Sanger Institute
IAI39 CU928164 4731(7) 5132068 Genoscope
ABU 83972 CP001671 4793(6) 5131397 Georg-August-University Goettingen
IHE3034 CP001969 4757(3) 5108383 IGS
APEC O1 CP000468 4467(3) 5082025 Iowa State University
SMS-3-5 CP000970 4742(3) 5068389 TIGR
UTI89 CP000243 5066(13) 5065741 Washington University
S88 CU928161 4695(3) 5032268 Genoscope
UM146 CP002167 4650(0) 4993013 MBRI
E24377A CP000800 4755(0) 4979619 TIGR
O127:H6 E2348/69 FM180568 4553(4) 4965553 Sanger Institute
536 CP000247 4629(2) 4938920 University of Goettingen
W CP002185 4478(4) 4900968 AIBN/KRIBB
SE11 AP009240 4679(0) 4887515 Kitasato Institute for Life Sciences
O83:H1 NRG 857C CP001855 4429(13) 4747819 Public Health Agency of Canada Laboratory for Foodborne Zoonoses
ATCC 8739 CP000946 4180(7) 4746218 US DOE Joint Genome Institute
SE15 AP009378 4338(0) 4717338 Kitasato University
IAI1 CU928160 4353(4) 4700560 Genoscope
K-12 substr. DH10B CP000948 4125(5) 4686137 University of Wisconsin-Madison
K-12 substr. W3110 AP009048 4225(9) 4646332 Nara Institute of Science and Technology
HS CP000802 4383(3) 4643538 TIGR
K-12 substr. MG1655 U00096 4144(7) 4639675 University of Wisconsin-Madison
DH1 CP001637 4159(4) 4630707 US DOE Joint Genome Institute
BL21-Gold(DE3)pLysS CP001665 4208(8) 4629812 US DOE Joint Genome Institute
BW2952 CP001396 4083(5) 4578159 TEDA School of Biological Sciences and Biotechnology
BL21(DE3) BL21 AM946981 4227(4) 4570938 Austrian Center for Biopharmaceutical Technology
B REL606 CP000819 4158(6) 4558953 International E. coli B Consortium
BL21(DE3) CP001509 4181(23) 4558947 Korea Research Institute of Bioscience and Biotechnology
  1. Details for input strains for the E. coli case study. The first number in column called ’# of genes’ corresponds to the number of annotated genes, the second (in brackets) corresponds to the number of genes excluded in the study due to unusual start or stop codons or sequence length not divisible by three.