|
(A) Order
|
16S sequences identified by
|
Percentage of 16S sequences identified by
|
|---|
| |
i-rDNA
|
meta-RNA
|
i-rDNA
|
meta-RNA
|
|---|
|
Bacteroidales
|
1456
|
1469
|
60.9
|
59.5
|
|
Campylobacterales
|
247
|
286
|
10.3
|
11.6
|
|
Clostridiales
|
208
|
208
|
8.7
|
8.4
|
|
Fusobacteriales
|
143
|
182
|
6.0
|
7.4
|
|
Aeromonadales
|
143
|
130
|
6.0
|
5.3
|
|
Enterobacteriales
|
78
|
78
|
3.3
|
3.2
|
|
Burkholderiales
|
78
|
78
|
3.3
|
3.2
|
|
Mycoplasmatales
|
13
|
13
|
0.5
|
0.5
|
|
Erysipelotrichales
|
13
|
13
|
0.5
|
0.5
|
|
Bifidobacteriales
|
13
|
13
|
0.5
|
0.5
|
|
TOTAL
|
2392
|
2470
| |
|
(B) Class
|
16S sequences identified by
|
Percentage of 16S sequences identified by
|
| |
i-rDNA
|
meta-RNA
|
i-rDNA
|
meta-RNA
|
|
Bacteroidia
|
1456
|
1469
|
60.5
|
59.2
|
|
Epsilonproteobacteria
|
260
|
286
|
10.8
|
11.5
|
|
Gammaproteobacteria
|
221
|
221
|
9.2
|
8.9
|
|
Clostridia
|
208
|
208
|
8.6
|
8.4
|
|
Fusobacteria
|
143
|
182
|
5.9
|
7.3
|
|
Betaproteobacteria
|
78
|
78
|
3.2
|
3.1
|
|
Mollicutes
|
13
|
13
|
0.5
|
0.5
|
|
Erysipelotrichi
|
13
|
13
|
0.5
|
0.5
|
|
Actinobacteria
|
13
|
13
|
0.5
|
0.5
|
|
TOTAL
|
2405
|
2483
| |
|
(C) Phylum
|
16S sequences identified by
|
Percentage of 16S sequences identified by
|
| |
i-rDNA
|
meta-RNA
|
i-rDNA
|
meta-RNA
|
|
Bacteroidetes
|
1508
|
1599
|
61.1
|
60.3
|
|
Proteobacteria
|
572
|
624
|
23.2
|
23.5
|
|
Firmicutes
|
221
|
221
|
8.9
|
8.3
|
|
Fusobacteria
|
143
|
182
|
5.8
|
6.9
|
|
Tenericutes
|
13
|
13
|
0.5
|
0.5
|
|
Actinobacteria
|
13
|
13
|
0.5
|
0.5
|
|
TOTAL
|
2470
|
2652
| |
- * The taxonomic affiliations were obtained by providing the sequences as input to the RDP classifier (Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 73(16):5261-7.
- # Gupta SS, Mohammed MH, Ghosh TS, Kanungo S, Nair GB, Mande SS. Metagenome of the gut of a malnourished child. Gut Pathog. 2011 May 20;3:7.
