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Table 1 Structural quality assessment of wild-type β-mannosidase models

From: A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation

Models Results of the tests performed
  RMSD (calculated by PyMOL) (Å) PROCHECK (ramachandran plot statistics) Verified3D (Z-Score) Energy (reported by Modeller) (kcal/mol) PDB validation (deviations from ideal geometry)
   Residues in most favored regions Residues in allowed regions    Bond angles (degree) Bond lengths (Å)
Cow 0.292 86.5% 10.8% -1.61 11577.25 3.3 0.021
Goat 0.280 87.8% 8.2% -1.61 8713.15 3.5 0.020
Human 0.295 85.7% 9.9% -1.44 9281.74 3.2 0.021
Mouse 0.295 92.1% 7.1% -1.28 8503.92 3.3 0.021