|
Data coverage
| | | | | |
|
Coverage of phenotype
|
HCC only
|
HCC only
|
15 cancers
|
Half the data are on cancer
|
Mostly cancer and stem cell
|
|
Coverage of HCC-specific data (signatures // articles)
|
143 // 98
|
12 // 32
|
6 // 5
|
25 // 21
|
34 // 18
|
|
Overall data coverage
|
Same as above
|
Same as above
|
65 // 48
|
3369 // 2644
|
2142 // 973
|
|
Covers both transcriptomics and proteomics studies
|
Yes
|
Yes
|
No (proteomics only)
|
Yes
|
Yes
|
|
Data content
| | | | | |
|
Explicit designation of compared sample groups
|
Yes
|
No
|
Yes
|
No
|
No
|
|
Contains numerical ranking information
|
Yes
|
No (change direction only)
|
Yes (fold change only)
|
No
|
Yes
|
|
Uniform representation of numerical ranking values
|
Yes (unique to Liverome)
|
No
|
No
|
No
|
No
|
|
Informative naming of signatures
|
Yes (unique to Liverome)
|
No
|
No
|
No
|
No
|
|
Summary of experiment
|
Yes (unique to Liverome)
|
No
|
No
|
No
|
No
|
|
Web interface
| | | | | |
|
Signature comparison tool
|
Yes
|
No
|
Yes
|
Yes
|
Yes
|
|
Gene search tool
|
Yes
|
Yes
|
Yes
|
No
|
Yes
|
|
Functional categorization of signatures for guided browsing
|
Yes (unique to Liverome)
|
No
|
No
|
No
|
No
|
|
Spreadsheet-like sorting utility for prioritization
|
Yes (unique to Liverome)
|
No
|
No
|
No
|
No
|
