|
FAMeS Data set
|
Taxonomic assignment category
|
Results with complete database
|
Results with modified database
|
|---|
| | |
INDUS
|
TACOA
|
SOrT-ITEMS
|
MEGAN
|
SPHINX
|
INDUS
|
TACOA
|
SOrT-ITEMS
|
MEGAN
|
SPHINX
|
|---|
|
SimLC (96732)
|
Correct
|
89.6
|
79.3
|
94.9
|
95
|
93.1
|
81.6
|
74.4
|
78.1
|
72.6
|
83.7
|
| |
Wrong
|
2.6
|
9
|
2
|
2.7
|
2.8
|
7.1
|
13.9
|
9.2
|
23.6
|
11.5
|
| |
Specific
|
81.3
|
24.4
|
94.9
|
93.9
|
82.8
|
66.7
|
21
|
78.1
|
65
|
71
|
| |
Non-specific
|
8.3
|
54.9
|
0
|
1.1
|
10.3
|
14.9
|
53.5
|
0
|
7.6
|
12.7
|
| |
Unassigned
|
7.9
|
11.6
|
3.1
|
2.3
|
4.1
|
11.4
|
11.6
|
12.6
|
3.7
|
4.8
|
|
SimMC (113373)
|
Correct
|
92.8
|
82.5
|
93.7
|
94
|
92.6
|
86
|
79
|
79.1
|
69.9
|
81.8
|
| |
Wrong
|
1
|
7.3
|
3.1
|
3.5
|
3.6
|
4.6
|
10.8
|
9.1
|
26.6
|
13.5
|
| |
Specific
|
84.1
|
23.7
|
93.7
|
93.1
|
81.1
|
71.9
|
23
|
79.1
|
63.2
|
70.1
|
| |
Non-specific
|
8.7
|
58.8
|
0
|
1
|
11.5
|
14.1
|
56
|
0
|
6.7
|
11.6
|
| |
Unassigned
|
6.2
|
10.2
|
3.2
|
2.4
|
3.8
|
9.4
|
10.2
|
11.8
|
3.5
|
4.7
|
|
SimHC (115592)
|
Correct
|
89.6
|
72.1
|
92
|
91.9
|
86
|
78.9
|
67
|
76.6
|
77.9
|
77.6
|
| |
Wrong
|
1.9
|
11.4
|
3.6
|
4.9
|
7.1
|
5.7
|
16
|
9.5
|
17.6
|
10.1
|
| |
Specific
|
76.4
|
18.7
|
92
|
90.3
|
79.6
|
63.4
|
18.2
|
76.6
|
69.5
|
71.2
|
| |
Non-specific
|
13.2
|
53.4
|
0
|
1.5
|
6.4
|
15.5
|
48.8
|
0
|
8.4
|
6.4
|
| |
Unassigned
|
8.6
|
16.5
|
4.3
|
3.2
|
6.9
|
15.5
|
17
|
13.9
|
4.5
|
12.3
|
|
Average for FAMeS data sets
|
Correct
|
90.6
|
78
|
93.5
|
93.6
|
90.6
|
82.2
|
73.5
|
77.9
|
73.5
|
81
|
| |
Wrong
|
1.8
|
9.3
|
2.9
|
3.7
|
4.5
|
5.8
|
13.6
|
9.3
|
22.6
|
11.7
|
| |
Specific
|
80.6
|
22.3
|
93.5
|
92.4
|
81.2
|
67.3
|
20.7
|
77.9
|
65.9
|
70.8
|
| |
Non-specific
|
10.1
|
55.7
|
0
|
1.2
|
9.4
|
14.8
|
52.8
|
0
|
7.6
|
10.2
|
| |
Unassigned
|
7.6
|
12.8
|
3.5
|
2.6
|
4.9
|
12.1
|
12.9
|
12.8
|
3.9
|
7.3
|
- Summary of the results obtained with the FAMeS metagenomic data sets. The complete and modified reference database contained genome fragments from 952 and 652 prokaryotic genomes respectively. The number of sequences in each data set is indicated in parenthesis.
