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Table 3 Validation results of INDUS with Sargasso sea metagenomic data set.

From: INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences

Order (308709)

 

Class (361653)

Burkholderiales

31.02

 

Betaproteobacteria

33.93

Alteromonadales

10.64

 

Gammaproteobacteria

20.07

Prochlorales

1.81

 

Alphaproteobacteria

0.9

Aeromonadales

1.22

 

Bacilli

0.34

Chroococcales

1.06

 

Clostridia

0.29

Enterobacteriales

0.53

 

Actinobacteria (class)

0.26

Pseudomonadales

0.52

 

Mollicutes

0.25

Rhizobiales

0.26

 

Spirochaetes (class)

0.03

Clostridiales

0.21

 

Deltaproteobacteria

0.02

Actinomycetales

0.11

 

Epsilonproteobacteria

0.02

Rickettsiales

0.11

   

Mycoplasmatales

0.09

 

Phylum (429056)

Bacillales

0.07

 

Proteobacteria

60.98

Xanthomonadales

0.06

 

Cyanobacteria

3.67

Lactobacillales

0.04

 

Firmicutes

1.15

Nitrosopumilales

0.04

 

Actinobacteria

0.3

Spirochaetales

0.03

 

Tenericutes

0.29

Thiotrichales

0.02

 

Thaumarchaeota

0.06

Campylobacterales

0.02

 

Spirochaetes

0.04

Rhodobacterales

0.02

 

Bacteroidetes

0.02

Vibrionales

0.02

 

Euryarchaeota

0.02

-

-

 

Thermotogae

0.02

-

-

 

Planctomycetes

0.02

  1. Taxonomic profile, indicating the cumulative percentage of sequences assigned at various taxonomic levels. The cumulative number of sequences assigned at each taxonomic level is indicated in parenthesis.
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BMC Genomics

ISSN: 1471-2164

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