| Simulated SNPs | Real SNPs | ||||
---|---|---|---|---|---|---|
Program | Reads | Time (s) | Accuracy (%) | Reads | Time (s) | Accuracy (%) |
Bowtie-35 | 24326 | 2 | 76.4 | 72241 | 4 | 90.5 |
BWA-35 | 24326 | 5 | 83.4 | 72241 | 8 | 90.2 |
Bowtie-76 | 24359 | 3 | 89.2 | 72241 | 4 | 93.4 |
BWA-76 | 24359 | 9 | 92.8 | 72241 | 19 | 92.8 |
Bowtie-128 | 24373 | 2 | 90.1 | 72241 | 5 | 92.4 |
BWA-128 | 24373 | 5 | 94.7 | 72241 | 49 | 93.4 |
Bowtie-512 | 24373 | 3 | 93.8 | 72241 | 9 | 93.5 |
BWA-512 | 24373 | 23 | 97.2 | 72241 | 132 | 91.7 |