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Table 1 Using the distance matrix that corrected separated Aves cluster: K-Means compared to ASAP

From: A singular value decomposition approach for improved taxonomic classification of biological sequences

 

Number of species joined by clusters

Linnaean Taxonomy levels in common by clusters

common Linnaean taxonomy levels frequency (cLtlf) by cluster

Cluster

K-means with rank 60

SNJ with rank 60

K-means with rank 09

SNJ with rank 09

K-means with rank 60

SNJ with rank 60

K-means with rank 09

SNJ with rank 09

K-means with rank 60

SNJ with rank 60

K-means with rank 09

SNJ with rank 09

1

10

10

10

10

10

10

10

10

100

100

100

100

2

14

27

14

25

10

9

10

9

140

243

140

225

3

4

1

4

7

12

13

12

8

48

13

48

56

4

7

17

4

7

8

8

10

8

56

136

40

56

5

2

2

9

2

13

11

9

12

26

22

81

24

6

6

1

4

4

10

13

10

10

60

13

40

40

7

5

1

6

4

9

13

10

12

45

13

60

48

8

11

1

8

1

9

13

8

13

99

13

64

13

  1. This table displays the results of K-Means and ASAP on a cluster of 60 species obtained in the first ASAP clustering round, when 76 species were separated into clusters.