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Table 1 Online resources for the reconstruction of the metabolic network of Chlamydomonas reinhardtii

From: AlgaGEM – a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

Database Link
Genome Database  
DOE Joint Genome Institute (JGI); Chlamydomonas reinhardtii v4.0 http://genome.jgi-psf.org/Chlre4/Chlre4.home.html
An Online Informatics Resource for Chlamydomonas (Chlamy Center) http://www.chlamy.org/chlamydb.html
Pathway Databases  
Kyoto Encyclopedia of Genes and Genomes (KEGG) http://www.genome.jp/kegg/pathway.html
ChlamyCyc http://chlamyto.mpimp-golm.mpg.de/chlamycyc/index.jsp
Metacyc http://metacyc.org/
ExPASy Biochemical Pathways http://www.expasy.ch/cgi-bin/search-biochem-index
Enzymes Databases  
ExPASy Enzyme Database http://ca.expasy.org/enzyme/
  http://www.brenda-enzymes.info/
Enzyme/Protein Localization and others Databases*  
AraPerox (Arabidopsis Protein from Plant Peroxisomes) http://www.araperox.uni-goettingen.de/
SUBA (Arabidopsis subcellular database) http://www.plantenergy.uwa.edu.au/applications/suba2/index.php
PPDB (Plant proteome database) http://ppdb.tc.cornell.edu/default.aspx
UniproKB/SwissProt http://ca.expasy.org/sprot/relnotes/relstat.html
Transport DB http://www.membranetransport.org/
  1. *Manual curation based on literature and homology sequence.