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Table 4 Comparison of performance as a function of the inclusion of features for the Mus musculus organism.

From: Improvement in the prediction of the translation initiation site through balancing methods, inclusion of acquired knowledge and addition of features to sequences of mRNA

Features Ac Pr Se Sp Adj
No 95.23 (1.09) 46.44 (9.42) 82.13 (8.94) 95.79 (1.12) 88.96 (4.48)
ATG + STOP + GAG 94.54 (1.15) 43.05 (6.18) 91.55 (3.76) 94.68 (1.14) 93.11 (2.13)
ATG+STOP+CTG+GAC+GAG 94.48 (1.11) 42.69 (4.85) 90.88 (4.80) 94.64 (1.20) 92.76 (2.27)
ATG + STOP 94.54 (0.89) 42.83 (5.44) 90.59 (4.56) 94.72 (0.95) 92.66 (2.26)
ATG + STOP + CTG + GAC 94.54 (1.40) 43.35 (6.77) 90.30 (4.91) 94.72 (1.45) 92.51 (2.53)
ATG+STOP+CTG+GAC+GAG+GCC 94.54 (0.99) 42.72 (4.76) 89.44 (5.08) 94.77 (0.98) 92.11 (2.66)
ATG 94.85 (1.28) 45.02 (8.66) 89.34 (4.38) 95.09 (1.37) 92.21 (2.18)
ATG + STOP + GCC 94.54 (1.18) 43.02 (6.56) 89.34 (5.01) 94.77 (1.23) 92.06 (2.55)
ATG + STOP + GAC 94.66 (1.34) 43.89 (7.62) 88.86 (4.37) 94.91 (1.41) 91.89 (2.20)
ATG + STOP + CTG 94.70 (1.17) 43.68 (5.90) 88.57 (4.12) 94.96 (1.20) 91.77 (2.18)
ATG + CTG 94.86 (1.18) 44.65 (6.69) 88.47 (3.44) 95.14 (1.23) 91.81 (1.79)
ATG + GAG 94.70 (1.41) 44.25 (8.95) 88.09 (4.69) 94.98 (1.45) 91.53 (2.49)
ATG + GCC 95.12 (1.11) 46.03 (6.78) 88.00 (5.92) 95.44 (1.14) 91.72 (3.02)
ATG + GAC 95.26 (0.78) 46.42 (5.63) 87.42 (5.41) 95.60 (0.81) 91.51 (2.70)
STOP + GAC 94.48 (1.31) 42.31 (7.73) 85.01 (8.51) 94.88 (1.19) 89.95 (4.52)
STOP + CTG 94.25 (1.35) 41.52 (7.51) 84.72 (5.71) 94.66 (1.42) 89.69 (2.88)
STOP 94.08 (1.23) 40.13 (7.01) 82.61 (8.31) 94.58 (1.19) 88.60 (4.30)
STOP + GAG 94.48 (1.49) 42.61 (8.69) 82.33 (8.27) 95.01 (1.48) 88.67 (4.30)
GCC 94.74 (1.14) 43.52 (7.86) 82.13 (8.77) 95.28 (1.22) 88.71 (4.31)
CTG + GAG 94.80 (1.13) 44.05 (8.56) 81.94 (7.69) 95.36 (1.21) 88.65 (3.80)
CTG + GAC + GAG 94.53 (1.11) 42.20 (6.34) 81.94 (9.26) 95.08 (1.14) 88.51 (4.60)
STOP + GCC 93.97 (1.45) 40.05 (7.72) 81.94 (7.69) 94.50 (1.60) 88.22 (3.70)
GAG 94.78 (1.14) 43.85 (8.45) 81.56 (9.38) 95.36 (1.23) 88.46 (4.63)
CTG 94.74 (1.36) 43.96 (9.04) 81.56 (9.22) 95.31 (1.49) 88.44 (4.50)
GAC 94.85 (1.13) 44.03 (7.79) 81.46 (8.75) 95.42 (1.10) 88.44 (4.45)
GAG + GCC 94.88 (1.34) 44.33 (8.70) 81.26 (8.89) 95.46 (1.23) 88.36 (4.70)
GAC + GAG 94.95 (1.10) 44.77 (8.06) 81.17 (9.00) 95.55 (1.21) 88.36 (4.39)
CTG + GAC 95.00 (1.11) 45.00 (8.98) 81.08 (8.16) 95.60 (1.15) 88.43 (4.11)
CTG + GAC + GAG + GCC 94.77 (1.22) 43.62 (8.15) 80.98 (8.27) 95.36 (1.18) 88.17 (4.28)
CTG + GCC 94.39 (1.34) 41.82 (8.03) 80.98 (8.45) 94.96 (1.41) 87.97 (4.18)
GAC + GCC 94.34 (1.06) 41.07 (6.78) 80.21 (9.11) 94.95 (1.11) 87.58 (4.50)
  1. These results were obtained using a window size of -10+30 and the M-(Clus method. The method of including acquired knowledge, InAKnow, was not used.