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Table 1 Summary of 454 sequencing and assembly for P. notoginseng

From: Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers

  No. of sequences No. of bases
HQ reads 188,185 77,079,504
Average HQ read length 410 ± 138 bp  
Reads used in assembly 184,785 75,152,969
Reads assembled as contigs 164,855 65,067,207
Number of contigs 14,005 8,131,261
Average length of contigs 581 ± 404 bp  
Range of contig lengths 95 - 10,423 bp  
Contigs above 200 bp 12,809 7,956,026
Number of singletons 16,847 5,775,116
Average length of singletons 343 ± 166 bp  
Range of singleton lengths 50 - 728 bp  
Singletons above 200 bp 12,365 5,310,178
Number of unique sequencesa 30,852  
Unique sequences above 200 bases 25,174  
  1. a The total number of contigs and singletons.