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Table 4 Summary of di- and tri-nucleotide repeats in P

From: Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers

Repeat composition

No. of unique sequences (relative percentage)

Dinucleotide

 

   AC/CA/GT/TG

167 (8.9%)

   AG/GA/CT/TC

1073 (57.3%)

   AT/TA

630 (33.7%)

   CG/GC

2 (0.1%)

   Total of dinucleotide

1872 (100%)

Trinucleotide

 

   AAC/CAA/ACA/GTT/TTG/TGT

35 (5.1%)

   AAG/GAA/AGA/CTT/TTC/TCT

152 (21.9%)

   AAT/TAA/ATA/ATT/TTA/TAT

73 (10.5%)

   ACC/CAC/CCA/GGT/GTG/TGG

62 (8.9%)

   ACG/CGA/GAC/CGT/GTC/TCG

15 (2.2%)

   ACT/CTA/TAC/AGT/TAG/GTA

28 (4%)

   AGC/CAG/GCA/TGC/CTG/GCT

116 (16.7%)

   AGG/GGA/GAG/TCC/CTC/CCT

74 (10.7%)

   ATC/CAT/TCA/GAT/ATG/TGA

113 (16.3%)

   CCG/CGC/GCC/GGC/GCG/CGG

25 (3.6%)

   Total of trinucleotide

693 (100%)