Table 1 Simulation results of numbers of TPs, and FPs from different methods (nde = 1000, rep = 3, b = 1.5, diff = c(3,6))

From: A gene selection method for GeneChip array data with small sample sizes

q-value		MBIS		SAM-T
				S0 = 0	20	40	60	80	100
0.05	TP	957	244	0	0	0	0	0	0
	FP	94	19	0	0	0	0	0	0
	Est. FP	95	16
	Obs. FDR	0.09	0.07	0	0	0	0	0	0
0.10	TP	976	669	0	0	0	0	0	0
	FP	203	99	0	0	0	0	0	0
	Est. FP	211	106
	Obs. FDR	0.17	0.13	0	0	0	0	0	0
0.15	TP	983	821	0	771	835	821	877	891
	FP	324	228	0	16	26	16	27	26
	Est. FP	289	232
	Obs. FDR	0.25	0.22	0	0	0.02	0.03	0.02	0.03
0.20	TP	992	896	474	893	910	909	917	932
	FP	488	379	44	80	92	81	85	75
	Est. FP	474	388
	Obs. FDR	0.33	0.30	0.08	0.08	0.09	0.08	0.08	0.07
0.25	TP	994	924	704	916	926	929	935	949
	FP	632	529	116	145	142	134	141	129
	Est. FP	620	552
	Obs. FDR	0.39	0.36	0.14	0.14	0.13	0.13	0.13	0.12

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