A gene selection method for GeneChip array data with small sample sizes

Table 2 Results from real data for given cutoff q-values

q-value		0.01	0.025	0.05	0.075	0.1
p- cutoff (from "qvalue")	MBIS	0.00685	0.0240	0.0617	0.108	0.162
	T	0.00144	0.0155	0.0613	0.123	0.192
	SAM	0	0	0.00741	0.0560	0.0969
# DE genes	MBIS	3075	4306	5550	6458	7276
	T	561	2402	4748	6345	7435
	SAM	0	0	3695	4734	5335
# common DE genes	MBIS, T	459	1954	3861	5261	6330
	MBIS, SAM	0	0	3694	4734	5335
	T, SAM	0	0	3327	4504	5228
Est. FDR	MBIS	0.0177	0.0443	0.0884	0.133	0.177
	T	0.0186	0.0468	0.0937	0.141	0.187