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Table 2 Optimal parameters of the octamer predicted by RNAMotifModeler.

From: Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1

 

A

G

A

A

G

A

A

G

A

1.00

0.17

1.00

1.00

0.24

1.00

1.00

0.81

G

0.79

1.00

0.65

0.90

1.00

0.84

1.00

1.00

C

0.52

0.32

0.50

0.16

0.35

0.02

0.34

0.63

U

0.75

0.15

0.39

0.63

0.09

0.06

0.73

0.55

UP

0.99

0.96

0.99

0.99

0.98

0.99

0.92

0.83

  1. The column headers represent the predicted reference motif. The first four rows indicate the retained binding affinity ratio corresponding to a sequence alteration from each nt in the reference motif. The last row shows the optimal unpaired probability (UP) for each nt of the predicted reference motif.
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BMC Genomics

ISSN: 1471-2164

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