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Table 2 Optimal parameters of the octamer predicted by RNAMotifModeler.

From: Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1

  A G A A G A A G
A 1.00 0.17 1.00 1.00 0.24 1.00 1.00 0.81
G 0.79 1.00 0.65 0.90 1.00 0.84 1.00 1.00
C 0.52 0.32 0.50 0.16 0.35 0.02 0.34 0.63
U 0.75 0.15 0.39 0.63 0.09 0.06 0.73 0.55
UP 0.99 0.96 0.99 0.99 0.98 0.99 0.92 0.83
  1. The column headers represent the predicted reference motif. The first four rows indicate the retained binding affinity ratio corresponding to a sequence alteration from each nt in the reference motif. The last row shows the optimal unpaired probability (UP) for each nt of the predicted reference motif.