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Table 5 General overview of Chlamydomonas reinhardtii miRNAs and their functional targets responded to sulfur-deprivation

From: Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtii

Potential Role miRNAs ID Expression of miRNA Functional Target Gene Expression of gene[3, 4]
Lipids metabolism miR914 Up Lipoxygenase Down
  n196 -S only SC5D, C-5 sterol desaturase Down
  n214 -S only Glycerol-3-phosphate dehydrogenase Unchanged
  n222 -S only LPB1, lowphosphate bleaching protein Up
Proteolisis and peptidolisis miR906.3p Up 26S proteasome regulatory subunit Unchanged
  miR1147.1 Up COP signalosome subunit 5 Down
  n198 -S only Peptidase M14, carboxypeptidase A Unchanged
  n222 -S only Peptidase M14, carboxypeptidase A Unchanged
Photosynthesis miR1150.3 Up Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies Down
  miR1166.1 Up Phosphatidylglycerophosphate synthase Down
  miR909.1 Up pheophorbide a oxygenase Unchanged
Carbon metabolism miR1158 Up 6-phosphogluconate dehydrogenase, decarboxylating Up
  n222 -S only NADP malic enzyme Down
Transporters and translocons n034 -S only PTA3, proton/phosphate symporter Down
  n197 +S only amino acid transporter Up
DNA binding, RNA binding, transcription and translation processes miR1166.1 Up ribosome biogenesis pescadillo-like protein Down
  n197 +S only PRPL1, plastid ribosomal protein Down
Purine and pyrimidine metabolism miR1147.1 Up Adenylate/guanylate kinase Down
Inositol metabolism miR1150.3 Up phosphatidylinositol 3-kinase-related protein kinase Unchanged
Amino acid metabolism miR1156.2 Up N-acetyltransferase Down
Kinases and phosphatases n005 Up Serine/threonine protein kinase Up
Redox processes n030 Up cytochrome P450, CYP85 clan Unchanged
  1. Potential role: potential role of target genes in metabolism; miRNAs ID: name of miRNA; expression of miRNA: the expression level of C. reinhardtii miRNAs after sulfur-deprivation; functional target gene: possible functional target genes by target gene prediction; expression of gene: the expression of target genes reported by published references