Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

Table 2 Comparison of divergent and differentially expressed genes in the phytopathogens to E. coli.

ASAP Feature ID			Gene Name	Product	Fold change
D. dadantii	P. atrosepticum	E. coli			D. dadantii	P. atrosepticum	E. coli
ABF-0014955	ABL-0064548	ABE-0003424	putA	Proline dehydrogenase	5.3	-3.7	1*
ABF-0015852	ABL-0063738	ABE-0002201		putative lipoprotein	-3.4	6.3	1.2*
ABF-0015853	ABL-0063739			putative membrane protein	-5.1	6.5
ABF-0015854	ABL-0063740			IcmF-related protein	-4.9	7
ABF-0015858	ABL-0063744			putative chaperone	-4.3	10
ABF-0015859	ABL-0063745			putative membrane protein	-5.8	8.8
ABF-0015860	ABL-0063746			hypothetical protein	-3.6	9.9
ABF-0015861	ABL-0063747			putative lipoprotein	-4.4	8.6
ABF-0015862	ABL-0063748			hypothetical protein	-4.5	9.4
ABF-0015864	ABL-0063749			hypothetical protein	-4.4	6.8
ABF-0015865	ABL-0063750			hypothetical protein	-5.6	6.8
ABF-0015866	ABL-0063751			hypothetical protein	-4.6	9.1
ABF-0015868	ABL-0063752			hypothetical protein	-3.8	6.6
ABF-0018340	ABL-0061543	ABE-0002155	lipA	lipoate synthase	3	-3.3	-1.4*
ABF-0018771	ABL-0062484		cybC	soluble cytochrome b562	3.3	-17.6

This list of orthologous phytopathogen genes have a 1-1 relationship according to OrthoMCL and are differentially expressed with a 3 fold or more change in gene expression for both orthologs, but in opposite directions. Where there is a single E. coli ortholog in the group, the fold change is included, and, statistically insignificant values are marked with an asterisk. The gene names and products were selected from among the three organisms to favor the most correct or most potentially informative and edited slightly to unify the format.

ISSN: 1471-2164