Table 3 Newly identified putative genomic islands on chromosome 1 and chromosome 2 of C. metallidurans CH34
From: Variation in genomic islands contribute to genome plasticity in Cupriavidus metallidurans
GI | Replicon | Size (kb) | Coordinates | Features |
|---|---|---|---|---|
CMGI-12 | CHR1 | 9.1 | 2,895,950-2,905,048 | Direct repeats (3' end sequence of a boundary tRNA gene), genes coding for hypothetical proteins |
CMGI-13 | CHR1 | 15.9 | 2,957,898-2,973,796 | Genes involved in polysaccharide biosynthesis |
CMGI-A | CHR2 | 87.1 | 813,173-900,292 | ISRme1 at one extremity |
CMGI-B | CHR2 | 19.5 | 1,075,185-1,094,655 | Multiple genes coding for phage-related proteins (associated to phages of Ralstonia solanacearum) |
CMGI-C | CHR2 | 7.1 | 1,160,750-1,167,881 | Fragment of tyrosine-based site-specific recombinase at one extremity, direct repeats (41 bp), gene coding for mannose-binding lectin |
CMGI-D | CHR2 | 141.2 | 1,217,667-1,358,908 | At one extremity 22 genes in synteny with R. solanacearum |
CMGI-E | CHR2 | 120.2 | 2,202,142-2,322,293 | Tn7-related genes at one extremity, genes putatively involved in degradation of aromatic compounds |