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Table 5 Primers used for the validation of gene expression and alternative splicing

From: RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

Gene

Primer sequence 5'→3'

Amplicon size (bp)

Primers for gene expression validation

GBG5

F: TCCAGCGTCGCGGCTATGAA

94

 

R: TCAAATCTGCAGCTGCCTGGGA

 

PGP

F: TGAAGCGGCTGGGCTTCCCTAT

131

 

R: GGGCACCAACATGGACAACCGA

 

QOP5F6

F: TGGTGACGTGCACCCGAATGA

112

 

R: AGCACCCACGATGGGGAAGATC

 

CFL1

F: TGGTGTCGACGACTTACGCACT

132

 

R: AGCGCCTCTCGTCTTGTAGGCT

 

B4GALT4

F: TGATACCGGCCTCTGTGCACCT

113

 

R: TGCCCTTCTGTGTCTCCACACCT

 

MYL7

F: ACCCCAGTGGTAAAGGCGTGGT

115

 

R: TCCATGGGTGTCAGGGCGAACA

 

DUS6

F: GGGCGAACTCGGCTTGGAACTT

118

 

R: AACGAGAATACGGGCGGCGA

 

Primers for alternative splicing validation

AP2B1-F1

GCCTAGATAGTCTGCTTGGCA

134

AP2B1-R

ACCACTGCTGACCACAGC

 

AP2B1-F2

GCCTAGATAGTCTGGTGGGA

92

AP2B1-R

ACCACTGCTGACCACAGC

 

ZDHHC16-F1

TGCTGCCATCGAGACTTA

97

ZDHHC16-R

GCACAGGAACCAGAGGTAGAC

 

ZDHHC16-F2

CGACAAGAACAAACTACAGG

118

ZDHHC16-R

GCACAGGAACCAGAGGTAGAC