Skip to main content

Table 2 Conserved miRNA targets and their putative functions

From: Transcriptome-wide identification and characterization of miRNAs from Pinus densata

miRNA Target function Targeta *Conserved with GO annotation
    ath osa ptc pta tch pab  
pde-miR162 DCL1 Singletons83286 (2) + + - - - - RNA processing
  Nodal modulator 1-like Singletons11093 (1) b + + + - - - Carboxypeptidase activity
pde-miR166 Class III HD-Zip protein HDZ33 Singletons59617 (2) + + - - - + DNA binding
pde-miR171 GRAS family transcription factor Singletons10015 (0.5)b
Singletons84522 (0.5)
+ + - - - - DNA binding
  Actin binding protein Singletons83401 (3) b - - - - - - Actin binding
pde-miR482 Histone deacetylase Singletons7264 (3) b + + + - - + Histone deacetylation
pde-miR2118 CC-NBS-LRR resistance-like protein Singletons50083 (3)
Singletons65538 (3)
Singletons72472 (3)
- + - - - + Defense response
  1. a All predicted miRNA targets with penalty scores (shown in parentheses) of three or less are listed.
  2. b validated by RLM-5' RACE.
  3. *Ath, osa, ptc, pta, tch and pab are the abbreviations for A. thaliana, O. sativa, P. trichocarpa, P. taeda, T. chinensis and P. abies, respectively.