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Table 1 Summary of de novo sequence assembly

From: De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode

  Sequences (n) Base pairs (Mbp) Length range (bp) Mean length (bp) N50 (bp)
Clean reads 52,081,238 4,687.31 90-90 90 90
SOAP contigs 336,641 60.21 60-3911 200 229
Trinity contigs 481,672 92.50 75-3696 192 250
SOAP unigenes 130,487 45.86 150-4113 351 392
Trinity unigenes 118,064 59.09 200-4214 500 599
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